Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23783 | Canola | cytosol | 59.12 | 61.04 |
| Bra005554.1-P | Field mustard | cytosol | 56.29 | 58.12 |
| AT2G32870.1 | Thale cress | cytosol | 75.16 | 57.45 |
| CDY12160 | Canola | cytosol | 53.77 | 54.98 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 46.23 | 51.04 |
| AT4G00780.1 | Thale cress | cytosol | 31.45 | 33.44 |
| AT4G01390.1 | Thale cress | cytosol | 31.45 | 33.33 |
| AT4G09770.4 | Thale cress | cytosol | 24.53 | 24.15 |
| KRH68153 | Soybean | cytosol | 23.58 | 24.04 |
| AT3G17380.1 | Thale cress | cytosol | 23.27 | 23.95 |
| AT3G46190.2 | Thale cress | cytosol | 22.96 | 23.47 |
| AT5G26290.1 | Thale cress | extracellular | 23.58 | 22.32 |
| AT1G69660.1 | Thale cress | cytosol | 16.04 | 22.08 |
| AT3G22080.1 | Thale cress | mitochondrion | 21.7 | 21.97 |
| AT3G22085.1 | Thale cress | cytosol | 19.81 | 21.65 |
| AT5G26320.1 | Thale cress | vacuole | 23.9 | 21.59 |
| AT5G26260.1 | Thale cress | extracellular | 23.58 | 21.37 |
| AT5G26280.3 | Thale cress | plastid | 23.9 | 20.6 |
| AT5G26300.1 | Thale cress | extracellular | 22.33 | 20.34 |
| AT3G28220.1 | Thale cress | cytosol | 23.58 | 20.27 |
| AT1G69650.1 | Thale cress | plastid | 18.55 | 20.07 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 22.33 | 19.56 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 23.58 | 18.94 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 17.3 | 18.58 |
| AT2G04170.1 | Thale cress | mitochondrion | 24.53 | 18.57 |
| AT1G65370.1 | Thale cress | cytosol | 13.21 | 18.5 |
| AT2G04190.1 | Thale cress | cytosol | 23.27 | 18.0 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 21.07 | 17.68 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 20.75 | 17.6 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 23.27 | 17.33 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 8.49 | 16.67 |
| AT2G15710.1 | Thale cress | cytosol | 18.87 | 16.44 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:817849 | ProteinID:AEC08756.1 | ArrayExpress:AT2G32880 | EnsemblPlantsGene:AT2G32880 |
| RefSeq:AT2G32880 | TAIR:AT2G32880 | RefSeq:AT2G32880-TAIR-G | EnsemblPlants:AT2G32880.1 | TAIR:AT2G32880.1 | UniProt:F4IUR8 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| RefSeq:NP_180847.2 | PFAM:PF00917 | PO:PO:0000293 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0000196D60 | : | : |
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR8]
Coordinates
chr2:-:13948733..13950745
Molecular Weight (calculated)
36730.3 Da
IEP (calculated)
9.190
GRAVY (calculated)
-0.275
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKMGLTSFE DAIKEQLKER KNAHFMLVDG MSKLLTEKVN NFQSLDFQVS GLKWRLLIQP AVGVKDYLSV AVWIIDEKCT GPNWEVKFNF KIGLLPQTGP
101: EYFYVSVGCH NEKQPAQGVV KFITHTQLKE RFLVNDKAVF YAEISEEVIP NFLVTGIPRT MGTAERFKLI EVARNNSRFT WKITKFSSFN GEEHSSYEFT
201: VGPRRWKLVM YPRGTGDGKG NSLSLYLNAS NYVTNNGPKG RTFAVYKLRV LDQLHRNHFE IDCQDWFLYD PVHPRLCSWG RTKFLPLEEL HKASRGFLVN
301: DQIYIGVEFL IVSTTEYL
101: EYFYVSVGCH NEKQPAQGVV KFITHTQLKE RFLVNDKAVF YAEISEEVIP NFLVTGIPRT MGTAERFKLI EVARNNSRFT WKITKFSSFN GEEHSSYEFT
201: VGPRRWKLVM YPRGTGDGKG NSLSLYLNAS NYVTNNGPKG RTFAVYKLRV LDQLHRNHFE IDCQDWFLYD PVHPRLCSWG RTKFLPLEEL HKASRGFLVN
301: DQIYIGVEFL IVSTTEYL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.