Factsheet for AT5G26290.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G26260.1	Thale cress	extracellular	69.64	66.67
AT5G26280.3	Thale cress	plastid	72.32	65.85
AT5G26300.1	Thale cress	extracellular	68.15	65.62
AT5G26320.1	Thale cress	vacuole	63.99	61.08
AT2G04170.1	Thale cress	mitochondrion	62.5	50.0
AT2G04190.1	Thale cress	cytosol	57.14	46.72
AT4G09770.4	Thale cress	cytosol	35.12	36.53
KRH68153	Soybean	cytosol	28.57	30.77
AT3G17380.1	Thale cress	cytosol	27.08	29.45
AT3G22085.1	Thale cress	cytosol	25.0	28.87
AT1G65050.1	Thale cress	cytosol, mitochondrion	13.39	27.78
AT3G22080.1	Thale cress	mitochondrion	25.89	27.71
AT4G09780.1	Thale cress	endoplasmic reticulum, golgi	34.82	27.4
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	23.81	27.03
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	29.17	27.0
AT1G69650.1	Thale cress	plastid	23.21	26.53
AT4G00780.1	Thale cress	cytosol	22.92	25.75
AT3G20380.1	Thale cress	extracellular, vacuole	27.98	25.07
AT3G46190.2	Thale cress	cytosol	22.92	24.76
AT1G69660.1	Thale cress	cytosol	16.96	24.68
AT1G65370.1	Thale cress	cytosol	16.67	24.67
AT4G01390.1	Thale cress	cytosol	22.02	24.67
AT3G20370.1	Thale cress	extracellular, plasma membrane	27.38	24.27
AT3G28220.1	Thale cress	cytosol	26.49	24.05
AT2G32880.1	Thale cress	cytosol	22.32	23.58
AT2G15710.1	Thale cress	cytosol	25.0	23.01
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	23.51	19.95
AT2G32870.1	Thale cress	cytosol	22.32	18.03

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.2	EntrezGene:832698	ProteinID:AED93548.2	ArrayExpress:AT5G26290	EnsemblPlantsGene:AT5G26290
RefSeq:AT5G26290	TAIR:AT5G26290	RefSeq:AT5G26290-TAIR-G	EnsemblPlants:AT5G26290.1	TAIR:AT5G26290.1	Unigene:At.20440
UniProt:F4JZS4	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0031225
GO:GO:0048229	GO:GO:0048236	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	RefSeq:NP_001318656.1
PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213	SMART:SM00061	SUPFAM:SSF49599
SignalP:SignalP-TM	TMHMM:TMhelix	InterPro:TRAF-like	UniParc:UPI0008487BF2	SEG:seg	:

Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26290]

Coordinates

chr5:+:9226079..9228026

Molecular Weight (calculated)

37966.2 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.213

Length

336 amino acids

Sequence
(BLAST)

001: MDTQKWSIGF ISLAFLFITS SSAELLIKQR NRIQQFSQFT NGVTRVWRDD RPSDKILSIT SFSIIRTRPE PYESSVFEAV GYKWRLVLYV NGNEKDGGKD
101: HVSLYAKIVE TESLPVGWEV NVDLKLFVYN GKLNKYLIVT DGTVKRYNNA TKELGYGQLI PQSTFYDGND GYREQDTGTF GAEIYIVKPA QQKEKVTFIS
201: NPPDNVFTWK ILHFSTLEDK VYQSNEFLVG DRYWKLGLNP KGGLVPIFLY AQGFKANAVV TTTYAATNLR LKNQRSSNHV TTYTAYWYLI PSGLGLGVNT
301: IPLSDVKDAS KGYVVNDSII IEVEMLTVSV TNIVSA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.