Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36041 | Canola | plasma membrane | 78.51 | 80.06 |
| CDX82252 | Canola | plastid | 78.24 | 79.11 |
| Bra001785.1-P | Field mustard | nucleus | 60.33 | 77.66 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 60.06 | 57.52 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 49.31 | 47.73 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 17.08 | 38.27 |
| AT3G22080.1 | Thale cress | mitochondrion | 32.51 | 37.58 |
| AT3G22085.1 | Thale cress | cytosol | 30.03 | 37.46 |
| AT1G69660.1 | Thale cress | cytosol | 23.69 | 37.23 |
| AT1G69650.1 | Thale cress | plastid | 28.93 | 35.71 |
| AT3G28220.1 | Thale cress | cytosol | 36.09 | 35.41 |
| AT3G46190.2 | Thale cress | cytosol | 30.03 | 35.05 |
| AT2G15710.1 | Thale cress | cytosol | 34.16 | 33.97 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 35.26 | 32.32 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.9 | 31.76 |
| AT1G65370.1 | Thale cress | cytosol | 19.83 | 31.72 |
| KRH68153 | Soybean | cytosol | 25.9 | 30.13 |
| AT3G17380.1 | Thale cress | cytosol | 25.62 | 30.1 |
| AT5G26290.1 | Thale cress | extracellular | 27.0 | 29.17 |
| AT5G26260.1 | Thale cress | extracellular | 27.55 | 28.49 |
| AT5G26300.1 | Thale cress | extracellular | 27.27 | 28.37 |
| AT5G26280.3 | Thale cress | plastid | 28.65 | 28.18 |
| AT5G26320.1 | Thale cress | vacuole | 27.27 | 28.12 |
| AT4G00780.1 | Thale cress | cytosol | 23.14 | 28.09 |
| AT4G09770.4 | Thale cress | cytosol | 23.97 | 26.93 |
| AT4G01390.1 | Thale cress | cytosol | 22.04 | 26.67 |
| AT2G32880.1 | Thale cress | cytosol | 19.56 | 22.33 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 25.07 | 21.31 |
| AT2G04170.1 | Thale cress | mitochondrion | 23.97 | 20.71 |
| AT2G04190.1 | Thale cress | cytosol | 23.14 | 20.44 |
| AT2G32870.1 | Thale cress | cytosol | 19.01 | 16.59 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:821580 | UniProt:A0A178VMG4 | ProteinID:AEE76368.1 | EMBL:AF462862 |
| ArrayExpress:AT3G20360 | EnsemblPlantsGene:AT3G20360 | RefSeq:AT3G20360 | TAIR:AT3G20360 | RefSeq:AT3G20360-TAIR-G | EnsemblPlants:AT3G20360.1 |
| TAIR:AT3G20360.1 | Unigene:At.28253 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_188671.1 | ProteinID:OAP05982.1 | PFAM:PF00917 | PFscan:PS50144 |
| PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | UniProt:Q8W0Z1 | SMART:SM00061 | SUPFAM:SSF49599 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI00000A72E2 | : | : | : |
Description
AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
Coordinates
chr3:-:7099771..7101637
Molecular Weight (calculated)
41765.9 Da
IEP (calculated)
9.296
GRAVY (calculated)
-0.272
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.