Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04288 | Canola | cytosol | 35.5 | 58.57 |
| AT1G69650.1 | Thale cress | plastid | 63.2 | 49.66 |
| AT1G65370.1 | Thale cress | cytosol | 45.02 | 45.81 |
| AT3G22080.1 | Thale cress | mitochondrion | 57.58 | 42.36 |
| AT3G22085.1 | Thale cress | cytosol | 50.22 | 39.86 |
| AT2G15710.1 | Thale cress | cytosol | 52.38 | 33.15 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 41.99 | 32.77 |
| AT3G46190.2 | Thale cress | cytosol | 32.47 | 24.12 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 37.23 | 23.69 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 36.36 | 22.4 |
| AT3G28220.1 | Thale cress | cytosol | 35.5 | 22.16 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 35.06 | 21.37 |
| AT3G17380.1 | Thale cress | cytosol | 28.14 | 21.04 |
| KRH68153 | Soybean | cytosol | 28.14 | 20.83 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 35.5 | 20.71 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 13.42 | 19.14 |
| AT4G09770.4 | Thale cress | cytosol | 26.41 | 18.89 |
| AT4G00780.1 | Thale cress | cytosol | 22.08 | 17.06 |
| AT5G26290.1 | Thale cress | extracellular | 24.68 | 16.96 |
| AT5G26260.1 | Thale cress | extracellular | 24.68 | 16.24 |
| AT5G26320.1 | Thale cress | vacuole | 24.68 | 16.19 |
| AT2G32880.1 | Thale cress | cytosol | 22.08 | 16.04 |
| AT5G26280.3 | Thale cress | plastid | 24.68 | 15.45 |
| AT5G26300.1 | Thale cress | extracellular | 22.94 | 15.19 |
| AT4G01390.1 | Thale cress | cytosol | 19.05 | 14.67 |
| AT2G04190.1 | Thale cress | cytosol | 25.11 | 14.11 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 24.24 | 13.11 |
| AT2G04170.1 | Thale cress | mitochondrion | 23.81 | 13.1 |
| AT2G32870.1 | Thale cress | cytosol | 20.78 | 11.54 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:843302 | ProteinID:AAG12701.1 | ProteinID:AAG52546.1 | ProteinID:AEE34960.1 |
| ArrayExpress:AT1G69660 | EnsemblPlantsGene:AT1G69660 | RefSeq:AT1G69660 | TAIR:AT1G69660 | RefSeq:AT1G69660-TAIR-G | EnsemblPlants:AT1G69660.1 |
| TAIR:AT1G69660.1 | Unigene:At.52452 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_177124.1 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 |
| PANTHER:PTHR26379:SF213 | UniProt:Q9FWZ4 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000A94DF | SEG:seg |
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ4]
Coordinates
chr1:-:26199623..26200603
Molecular Weight (calculated)
26770.7 Da
IEP (calculated)
6.150
GRAVY (calculated)
-0.482
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MESTPPTEAF AELRFYVYNK KENKYFTIQD VEVKRFNALR MVWGLLKVLS YDTFTNPENG FIFEGGECEF GVDVLVAPPL TNWEILSFDE KLSPPKFSWN
101: LKNFSELKED VYTSNKYPMG GKEWVLKLYP KGNSRADGKY LSLYVHLADS ETLKSDEKNF KQGHVRVLNP LGSNHVEVQS SCWYKESSRG WGWDHFLSIA
201: NLRKTYLDKE DALNVEIEFK VVSATKYSPI I
101: LKNFSELKED VYTSNKYPMG GKEWVLKLYP KGNSRADGKY LSLYVHLADS ETLKSDEKNF KQGHVRVLNP LGSNHVEVQS SCWYKESSRG WGWDHFLSIA
201: NLRKTYLDKE DALNVEIEFK VVSATKYSPI I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.