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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70350 Canola plastid 66.43 54.39
CDY70349 Canola cytosol 67.14 35.61
AT1G69660.1 Thale cress cytosol 58.57 35.5
CDY04290 Canola extracellular 61.43 33.46
CDY58708 Canola cytosol, nucleus, plastid 64.29 29.22
CDX81648 Canola plastid 59.29 29.02
CDY44083 Canola cytosol 65.0 28.89
CDY28571 Canola cytosol 45.0 27.88
CDY07338 Canola plastid 59.29 27.48
AT1G69650.1 Thale cress plastid 57.14 27.21
CDY04283 Canola plastid 58.57 25.71
CDY07340 Canola plastid 58.57 25.71
CDX95908 Canola plastid 65.0 24.86
CDY57407 Canola cytosol 53.57 24.19
CDY39500 Canola cytosol 54.29 23.75
CDY28575 Canola golgi 47.14 21.64
CDY44084 Canola cytosol 63.57 21.09
CDY19307 Canola cytosol 54.29 19.59
CDX83143 Canola cytosol 42.86 18.75
CDY36041 Canola plasma membrane 42.86 16.85
CDX82249 Canola plasma membrane, vacuole 45.0 16.45
CDX82252 Canola plastid 42.14 16.43
CDY36040 Canola extracellular 43.57 16.14
CDY43080 Canola endoplasmic reticulum, vacuole 43.57 16.01
CDY50083 Canola endoplasmic reticulum, vacuole 43.57 16.01
CDY43081 Canola extracellular, vacuole 43.57 15.97
CDY50084 Canola extracellular, vacuole 43.57 15.97
CDX82246 Canola endoplasmic reticulum, extracellular 42.86 15.92
CDX99123 Canola cytosol 21.43 15.62
CDX82251 Canola extracellular, golgi 44.29 15.54
CDY25415 Canola vacuole 43.57 15.1
CDY29822 Canola vacuole 42.86 14.89
CDY37377 Canola cytosol, plastid 51.43 14.69
CDY50282 Canola endoplasmic reticulum, vacuole 40.0 14.55
KRH68153 Soybean cytosol 32.14 14.42
CDY05324 Canola cytosol 30.71 14.33
CDY05531 Canola cytosol 30.0 14.05
CDX88229 Canola extracellular 35.0 14.0
CDX82248 Canola endoplasmic reticulum, vacuole 43.57 13.86
CDY19775 Canola extracellular 34.29 13.71
CDX87054 Canola extracellular 34.29 13.71
CDY67361 Canola vacuole 34.29 13.71
CDX81956 Canola extracellular 30.0 13.68
CDY05532 Canola extracellular 34.29 13.68
CDY24977 Canola extracellular 34.29 13.68
CDX74582 Canola extracellular, golgi, plastid 36.43 13.64
CDX80557 Canola extracellular 33.57 13.43
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 33.57 13.43
CDX75913 Canola cytosol 29.29 13.27
CDY34004 Canola cytosol 27.86 13.0
CDX82371 Canola cytosol 28.57 12.95
CDX87055 Canola golgi, plasma membrane 30.0 12.61
CDX87056 Canola extracellular 30.71 12.54
CDY19777 Canola extracellular 30.71 12.5
CDY70520 Canola vacuole 29.29 12.35
CDY19776 Canola extracellular, plasma membrane, vacuole 30.0 12.14
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 32.14 12.13
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 44.29 12.06
CDX74378 Canola cytosol 22.86 11.15
CDY46265 Canola plasma membrane 37.14 11.06
CDY29329 Canola plasma membrane 37.14 11.04
CDX91854 Canola cytosol 22.14 10.44
CDY39666 Canola endoplasmic reticulum, vacuole 23.57 10.0
CDY48522 Canola cytosol 19.29 9.68
CDY07146 Canola cytosol 20.0 9.49
CDY51713 Canola cytosol 19.29 9.15
CDY07196 Canola cytosol 19.29 9.09
CDX86065 Canola cytosol 20.0 8.89
CDX91855 Canola extracellular, plasma membrane, vacuole 11.43 8.08
CDY60616 Canola cytosol, mitochondrion, plastid 15.0 7.29
CDY36039 Canola vacuole 45.71 6.95
CDY23783 Canola cytosol 14.29 6.49
CDY12160 Canola cytosol 14.29 6.43
CDX84705 Canola cytosol 13.57 6.21
CDX79503 Canola cytosol 12.86 5.9
Protein Annotations
EnsemblPlants:CDY04288EnsemblPlantsGene:GSBRNA2T00118051001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFscan:PS50144ProteinID:CDY04288ProteinID:CDY04288.1SEG:segSUPFAM:SSF49599UniParc:UPI0004EF2090
MapMan:35.2:::::
Description
BnaC06g25270D
Coordinates
chrLK031950:-:1062689..1063298
Molecular Weight (calculated)
16210.4 Da
IEP (calculated)
5.217
GRAVY (calculated)
-0.228
Length
140 amino acids
Sequence
(BLAST)
001: MDDGSGFISM YVEIDSKSLT PPNEISVELR FFVYNKKKNK YFTIQDVEVK RFNALKTVWG LGRVLLYDTF NNPGNGYIFE GDQCEFGVHV IVSPPPTRME
101: ILSFDDKIPY PKYWTVKKFS ELIEYVHVSN SFSMGGMECF
Best Arabidopsis Sequence Match ( AT1G69660.1 )
(BLAST)
001: MESTPPTEAF AELRFYVYNK KENKYFTIQD VEVKRFNALR MVWGLLKVLS YDTFTNPENG FIFEGGECEF GVDVLVAPPL TNWEILSFDE KLSPPKFSWN
101: LKNFSELKED VYTSNKYPMG GKEWVLKLYP KGNSRADGKY LSLYVHLADS ETLKSDEKNF KQGHVRVLNP LGSNHVEVQS SCWYKESSRG WGWDHFLSIA
201: NLRKTYLDKE DALNVEIEFK VVSATKYSPI I
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.