Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00780.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT4G00780.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT4G00780.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037411.1-P | Field mustard | mitochondrion | 96.95 | 100.0 |
| CDY07146 | Canola | cytosol | 97.29 | 97.29 |
| AT4G00780.1 | Thale cress | cytosol | 69.83 | 68.9 |
| AT4G01390.1 | Thale cress | cytosol | 66.44 | 65.33 |
| CDX91854 | Canola | cytosol | 61.36 | 60.94 |
| CDX74378 | Canola | cytosol | 57.29 | 58.88 |
| CDY07196 | Canola | cytosol | 58.64 | 58.25 |
| CDY48522 | Canola | cytosol | 52.54 | 55.56 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 35.93 | 53.54 |
| CDX79503 | Canola | cytosol | 29.83 | 28.85 |
| CDX99123 | Canola | cytosol | 18.64 | 28.65 |
| CDX84705 | Canola | cytosol | 29.49 | 28.43 |
| CDY23783 | Canola | cytosol | 29.49 | 28.25 |
| CDY12160 | Canola | cytosol | 29.15 | 27.65 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 25.42 | 26.04 |
| CDX75913 | Canola | cytosol | 26.44 | 25.24 |
| CDX82371 | Canola | cytosol | 26.44 | 25.24 |
| CDY28571 | Canola | cytosol | 18.64 | 24.34 |
| CDY44083 | Canola | cytosol | 25.76 | 24.13 |
| KRH68153 | Soybean | cytosol | 24.75 | 23.4 |
| CDY05324 | Canola | cytosol | 23.39 | 23.0 |
| CDY28575 | Canola | golgi | 23.73 | 22.95 |
| CDY05531 | Canola | cytosol | 23.05 | 22.74 |
| CDY70349 | Canola | cytosol | 19.66 | 21.97 |
| CDX87055 | Canola | golgi, plasma membrane | 24.75 | 21.92 |
| CDX80557 | Canola | extracellular | 25.76 | 21.71 |
| CDY19775 | Canola | extracellular | 25.76 | 21.71 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 25.76 | 21.71 |
| CDY67361 | Canola | vacuole | 25.76 | 21.71 |
| CDX87054 | Canola | extracellular | 25.76 | 21.71 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 25.42 | 21.68 |
| CDX88229 | Canola | extracellular | 25.42 | 21.43 |
| CDY70520 | Canola | vacuole | 24.07 | 21.39 |
| CDY07338 | Canola | plastid | 21.69 | 21.19 |
| CDY24977 | Canola | extracellular | 25.08 | 21.08 |
| CDY36041 | Canola | plasma membrane | 25.42 | 21.07 |
| CDX87056 | Canola | extracellular | 24.41 | 20.99 |
| CDX82252 | Canola | plastid | 25.42 | 20.89 |
| CDY05532 | Canola | extracellular | 24.75 | 20.8 |
| CDY19777 | Canola | extracellular | 24.07 | 20.64 |
| CDY70350 | Canola | plastid | 11.86 | 20.47 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 26.1 | 20.42 |
| CDY57407 | Canola | cytosol | 21.36 | 20.32 |
| CDX81648 | Canola | plastid | 19.66 | 20.28 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 25.42 | 20.22 |
| CDX81956 | Canola | extracellular | 21.02 | 20.2 |
| CDY50084 | Canola | extracellular, vacuole | 26.1 | 20.16 |
| CDY04290 | Canola | extracellular | 17.29 | 19.84 |
| CDY07340 | Canola | plastid | 21.36 | 19.75 |
| CDY04283 | Canola | plastid | 21.36 | 19.75 |
| CDY43081 | Canola | extracellular, vacuole | 25.42 | 19.63 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 25.08 | 19.42 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 25.08 | 19.42 |
| CDX86065 | Canola | cytosol | 20.68 | 19.37 |
| CDX82251 | Canola | extracellular, golgi | 26.1 | 19.3 |
| CDY04288 | Canola | cytosol | 9.15 | 19.29 |
| CDX74582 | Canola | extracellular, golgi, plastid | 24.41 | 19.25 |
| CDX95908 | Canola | plastid | 23.73 | 19.13 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 19.66 | 18.83 |
| CDX82249 | Canola | plasma membrane, vacuole | 24.41 | 18.8 |
| CDY39500 | Canola | cytosol | 20.34 | 18.75 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 24.41 | 18.7 |
| CDY29822 | Canola | vacuole | 25.42 | 18.61 |
| CDY36040 | Canola | extracellular | 23.73 | 18.52 |
| CDY25415 | Canola | vacuole | 25.08 | 18.32 |
| CDX83143 | Canola | cytosol | 19.66 | 18.12 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 19.66 | 17.58 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 26.1 | 17.5 |
| CDY44084 | Canola | cytosol | 24.41 | 17.06 |
| CDY34004 | Canola | cytosol | 15.93 | 15.67 |
| CDY19307 | Canola | cytosol | 19.32 | 14.69 |
| CDY46265 | Canola | plasma membrane | 23.39 | 14.68 |
| CDY29329 | Canola | plasma membrane | 23.39 | 14.65 |
| CDY37377 | Canola | cytosol, plastid | 20.68 | 12.45 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 21.36 | 12.26 |
| CDY36039 | Canola | vacuole | 24.07 | 7.71 |
Protein Annotations
| EnsemblPlants:CDY51713 | EnsemblPlantsGene:GSBRNA2T00004064001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY51713 | ProteinID:CDY51713.1 | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0004EE8782 | UniProt:A0A078IRJ0 | MapMan:35.2 | : | : | : |
Description
BnaA09g52000DBnaA09g52000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRJ0]
Coordinates
chrLK033021:+:20310..22243
Molecular Weight (calculated)
33872.6 Da
IEP (calculated)
8.565
GRAVY (calculated)
-0.362
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPIPIEEM VRVFKSRHRT SHLFKIDNFS LFKKYQLEKV NSSVFDLGGH KWTLRVFPNG RKNASGHYVS IFLMSQASVN VKIEYELFVV SQLEQKWESS
101: GHREFGIHPK PTGKGNPKLI SLVDLERNGY LIGDSCMCGV KLHGIEPAES GTAECFSLIE KPLNNKVTWM MTRFSSFDPE KAHHSHEFVV GNRKWRIQVH
201: PRGFEEEKDE SFSVYLLGEG FINNASKTET YAKFKLRVLD QVNRNHVEKT CSGWLETSKG FADFMCLTKL VEPYLVNDKL YVGVDFEVVS VATYC
101: GHREFGIHPK PTGKGNPKLI SLVDLERNGY LIGDSCMCGV KLHGIEPAES GTAECFSLIE KPLNNKVTWM MTRFSSFDPE KAHHSHEFVV GNRKWRIQVH
201: PRGFEEEKDE SFSVYLLGEG FINNASKTET YAKFKLRVLD QVNRNHVEKT CSGWLETSKG FADFMCLTKL VEPYLVNDKL YVGVDFEVVS VATYC
001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.