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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • cytosol 1
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:secretory
PProwler:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70349 Canola cytosol 65.76 64.02
CDY07338 Canola plastid 75.1 63.91
CDY04283 Canola plastid 76.65 61.76
CDY04288 Canola cytosol 33.46 61.43
CDY07340 Canola plastid 74.71 60.19
CDY70350 Canola plastid 38.91 58.48
CDY28571 Canola cytosol 50.97 57.96
CDY44083 Canola cytosol 66.54 54.29
CDX81648 Canola plastid 57.59 51.75
CDY58708 Canola cytosol, nucleus, plastid 61.87 51.62
CDY28575 Canola golgi 60.7 51.15
CDX95908 Canola plastid 66.15 46.45
CDY57407 Canola cytosol 53.31 44.19
CDY44084 Canola cytosol 66.93 40.76
CDY39500 Canola cytosol 49.42 39.69
CDX99123 Canola cytosol 25.29 33.85
CDY19307 Canola cytosol 49.81 32.99
CDX83143 Canola cytosol 36.97 29.69
CDX82246 Canola endoplasmic reticulum, extracellular 40.08 27.32
CDY36041 Canola plasma membrane 37.35 26.97
CDY43080 Canola endoplasmic reticulum, vacuole 39.69 26.77
CDY50083 Canola endoplasmic reticulum, vacuole 39.69 26.77
CDX82252 Canola plastid 37.35 26.74
CDY50084 Canola extracellular, vacuole 39.69 26.7
CDY43081 Canola extracellular, vacuole 39.69 26.7
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 36.19 25.07
CDX82249 Canola plasma membrane, vacuole 37.35 25.07
CDX74582 Canola extracellular, golgi, plastid 35.41 24.33
CDY34004 Canola cytosol 28.02 24.0
CDY25415 Canola vacuole 37.35 23.76
CDY50282 Canola endoplasmic reticulum, vacuole 35.41 23.64
CDY36040 Canola extracellular 34.63 23.55
CDY37377 Canola cytosol, plastid 44.75 23.47
CDX82248 Canola endoplasmic reticulum, vacuole 40.08 23.41
CDX82251 Canola extracellular, golgi 36.19 23.31
CDY29822 Canola vacuole 36.19 23.08
CDX86065 Canola cytosol 28.02 22.86
CDX75913 Canola cytosol 26.85 22.33
KRH68153 Soybean cytosol 26.85 22.12
CDY05531 Canola cytosol 25.68 22.07
CDX82371 Canola cytosol 26.46 22.01
CDY05324 Canola cytosol 25.68 22.0
CDX88229 Canola extracellular 29.57 21.71
CDY67361 Canola vacuole 29.18 21.43
CDY24977 Canola extracellular 28.79 21.08
CDX87056 Canola extracellular 28.02 20.99
CDY19777 Canola extracellular 28.02 20.93
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 28.4 20.86
CDX87054 Canola extracellular 28.4 20.86
CDY05532 Canola extracellular 28.4 20.8
CDY39666 Canola endoplasmic reticulum, vacuole 26.46 20.61
CDY19775 Canola extracellular 28.02 20.57
CDX87055 Canola golgi, plasma membrane 26.46 20.42
CDX80557 Canola extracellular 27.63 20.29
CDX91854 Canola cytosol 22.96 19.87
CDX74378 Canola cytosol 22.18 19.86
CDY19776 Canola extracellular, plasma membrane, vacuole 26.07 19.36
CDY70520 Canola vacuole 24.9 19.28
CDX91855 Canola extracellular, plasma membrane, vacuole 14.79 19.19
CDY46265 Canola plasma membrane 35.02 19.15
CDY29329 Canola plasma membrane 34.63 18.9
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 37.74 18.87
CDX81956 Canola extracellular 22.18 18.57
CDY07196 Canola cytosol 21.01 18.18
CDX79503 Canola cytosol 21.4 18.03
CDY07146 Canola cytosol 20.62 17.97
CDX84705 Canola cytosol 21.01 17.65
CDY12160 Canola cytosol 21.01 17.36
CDY51713 Canola cytosol 19.84 17.29
CDY48522 Canola cytosol 18.68 17.2
CDY23783 Canola cytosol 20.23 16.88
CDY60616 Canola cytosol, mitochondrion, plastid 18.29 16.32
CDY36039 Canola vacuole 37.74 10.53
Protein Annotations
EnsemblPlants:CDY04290EnsemblPlantsGene:GSBRNA2T00118054001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDY04290ProteinID:CDY04290.1SignalP:SignalP-noTMSMART:SM00061
SUPFAM:SSF49599UniParc:UPI0004EF1EC5MapMan:35.2:::
Description
BnaC06g25250D
Coordinates
chrLK031950:-:1070538..1073058
Molecular Weight (calculated)
29557.8 Da
IEP (calculated)
7.494
GRAVY (calculated)
-0.226
Length
257 amino acids
Sequence
(BLAST)
001: MHVNLFTLSL RLILYPKGNG EDNGSGFISM YVEIDSESLM VSNLMVLTPP TEVFAELRFF VYNKKENKYF TIQDVEVKRF NALKTRWGMQ QGGQCEFGVD
101: VIVAPPLTNW EVLSFTEKYS DPKFSWTIKK ISELKEDVTS RTFSMGGKKW VLKLYPKGDP TADGKWLSVF LYLADCDKPK ADEKIFVQAN MRVLGPLGSN
201: HFKLQMETWY TEQTPAWGWS RFLSLAELGK VHLDKEDMLK VEIEFKVVSA TKYSPII
Best Arabidopsis Sequence Match ( AT1G69660.1 )
(BLAST)
001: MESTPPTEAF AELRFYVYNK KENKYFTIQD VEVKRFNALR MVWGLLKVLS YDTFTNPENG FIFEGGECEF GVDVLVAPPL TNWEILSFDE KLSPPKFSWN
101: LKNFSELKED VYTSNKYPMG GKEWVLKLYP KGNSRADGKY LSLYVHLADS ETLKSDEKNF KQGHVRVLNP LGSNHVEVQS SCWYKESSRG WGWDHFLSIA
201: NLRKTYLDKE DALNVEIEFK VVSATKYSPI I
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.