CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46265	Canola	plasma membrane	75.94	60.43
CDY29329	Canola	plasma membrane	75.94	60.3
CDX99123	Canola	cytosol	23.8	46.35
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	37.97	38.27
CDY70349	Canola	cytosol	27.01	38.26
CDX83143	Canola	cytosol	31.28	36.56
CDY04288	Canola	cytosol	13.64	36.43
CDX82246	Canola	endoplasmic reticulum, extracellular	36.1	35.81
CDX82252	Canola	plastid	34.22	35.65
CDY04290	Canola	extracellular	24.33	35.41
CDY36041	Canola	plasma membrane	33.16	34.83
CDY50083	Canola	endoplasmic reticulum, vacuole	35.29	34.65
CDY43080	Canola	endoplasmic reticulum, vacuole	35.29	34.65
CDY44083	Canola	cytosol	29.14	34.6
CDY70350	Canola	plastid	15.78	34.5
CDX82249	Canola	plasma membrane, vacuole	35.03	34.2
CDY28575	Canola	golgi	27.81	34.1
CDX82251	Canola	extracellular, golgi	36.1	33.83
CDY43081	Canola	extracellular, vacuole	34.49	33.77
CDY50282	Canola	endoplasmic reticulum, vacuole	34.76	33.77
CDX86065	Canola	cytosol	28.34	33.65
CDY28571	Canola	cytosol	20.32	33.63
CDY57407	Canola	cytosol	27.81	33.55
CDY07340	Canola	plastid	28.61	33.54
CDY04283	Canola	plastid	28.61	33.54
CDY07338	Canola	plastid	27.01	33.44
CDY58708	Canola	cytosol, nucleus, plastid	27.27	33.12
CDY50084	Canola	extracellular, vacuole	33.69	32.98
CDY29822	Canola	vacuole	35.03	32.51
CDY39666	Canola	endoplasmic reticulum, vacuole	28.61	32.42
KRH68153	Soybean	cytosol	26.74	32.05
CDY25415	Canola	vacuole	34.49	31.93
CDX95908	Canola	plastid	31.02	31.69
CDY34004	Canola	cytosol	25.4	31.67
CDY39500	Canola	cytosol	27.01	31.56
CDY36040	Canola	extracellular	31.55	31.22
CDX82248	Canola	endoplasmic reticulum, vacuole	36.63	31.14
CDX81648	Canola	plastid	23.53	30.77
CDX75913	Canola	cytosol	22.99	27.83
CDX82371	Canola	cytosol	22.99	27.83
CDY23783	Canola	cytosol	22.19	26.95
CDX84705	Canola	cytosol	21.12	25.82
CDX79503	Canola	cytosol	20.86	25.57
CDY19307	Canola	cytosol	26.47	25.52
CDY07146	Canola	cytosol	20.05	25.42
CDY05531	Canola	cytosol	20.32	25.42
CDX87055	Canola	golgi, plasma membrane	22.46	25.23
CDX74378	Canola	cytosol	19.25	25.09
CDY12160	Canola	cytosol	20.86	25.08
CDX91854	Canola	cytosol	19.79	24.92
CDX88229	Canola	extracellular	23.26	24.86
CDX91855	Canola	extracellular, plasma membrane, vacuole	13.1	24.75
CDY05324	Canola	cytosol	19.79	24.67
CDY44084	Canola	cytosol	27.81	24.64
CDY67361	Canola	vacuole	22.99	24.57
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	22.99	24.57
CDX87054	Canola	extracellular	22.99	24.57
CDY19776	Canola	extracellular, plasma membrane, vacuole	22.73	24.57
CDY51713	Canola	cytosol	19.25	24.41
CDX80557	Canola	extracellular	22.73	24.29
CDY19775	Canola	extracellular	22.46	24.0
CDY05532	Canola	extracellular	22.46	23.93
CDY24977	Canola	extracellular	22.46	23.93
CDX81956	Canola	extracellular	19.52	23.78
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.62	23.74
CDY70520	Canola	vacuole	20.59	23.19
CDX87056	Canola	extracellular	21.12	23.03
CDY19777	Canola	extracellular	21.12	22.97
CDY60616	Canola	cytosol, mitochondrion, plastid	17.38	22.57
CDY07196	Canola	cytosol	17.11	21.55
CDY48522	Canola	cytosol	14.71	19.71
CDY37377	Canola	cytosol, plastid	25.67	19.59
CDY36039	Canola	vacuole	35.29	14.33

Protein Annotations

EnsemblPlants:CDX74582	EnsemblPlantsGene:GSBRNA2T00114535001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	PFscan:PS51257	ProteinID:CDX74582	ProteinID:CDX74582.1	SMART:SM00061
SUPFAM:SSF49599	TMHMM:TMhelix	UniParc:UPI0004EEC6B5	MapMan:35.2	:	:

Description

BnaA04g08070D

Coordinates

chrLK031801:+:1761584..1763191

Molecular Weight (calculated)

42517.2 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.264

Length

374 amino acids

Sequence
(BLAST)

001: MFLKEKRKVN LNGAVLLFSC FFCAVFATIP LNPLATTQST NAVPCNTHGS RVAKAYGVDA NLSAEQRFMR DRPPSSYCVR IEGCSELITK SPNVQKYETR
101: PFSVGGFNWT FIIEPFGSTT NLGTWISAYV AIDPKGLVGE NREVYADLRF LAYSKTFDQY WTSMDTDIRR FHQSRTTWGN PNFIRHVNFI AKDREYIFDN
201: DQCVFGVDIS VFPFFNKWEV LSIDKTVYGP NSWKLLKFST LTRDFYVSDE FSIGGKTWAF KVYPNGYGTG EGNSLSLYLT LTENQTLKPY EKVYVRAKLR
301: VLDQKQSRHL EKPILSWFNA TGESSGLERF VSLTDLQNPA KGFIVNDSLS VQVQFEAVSS TNYYSSNAAQ ISSF

Best Arabidopsis Sequence Match ( AT1G58270.1 )
(BLAST)

001: MYSEEKKSRN YGSIFVYCFF CFVLIVEVAR FAKPYINLQN LIETEAVVEE GFMAVGNSGN LPCGSSKPSS ASVRAHDEQK LSQAVTTDTR TRPPNSYCVK
101: FQSFVTMAKQ VKENGGKYES RPFSVGGYNW TLLIYPVIYI PTDSGGYVSI YVRVDNSSLI TNPKDVYAEI TFLAYKSSTD KYQISQETEA QRFHLFKQQW
201: GLLQFLPIYY FENPAYGYFF EGESVVFGVD INIVKPFENW EVFSNEQNIR DPIFEWRLTK FSTRFLDSYT SDSFSSGGRN WALKVYPNGV GNATGNSLSL
301: YLLSDQSNDK GYVEAKLRVI DQIQSNNFEK KVAAWPNATE NGWGFDRFLS FADIKNTSKG FLVNDTLKLE VQILSFSKTD YYSHQSSLNV LTGDST

Arabidopsis Description

ZW9At1g58270/F19C14_8 [Source:UniProtKB/TrEMBL;Acc:Q9SLV3]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.