CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036573.1-P	Field mustard	extracellular	99.43	99.43
CDY19775	Canola	extracellular	98.57	98.57
CDY67361	Canola	vacuole	87.71	87.71
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	87.43	87.43
CDY70520	Canola	vacuole	82.86	87.35
CDX88229	Canola	extracellular	86.86	86.86
CDX80557	Canola	extracellular	86.86	86.86
CDY24977	Canola	extracellular	86.29	86.04
CDY05532	Canola	extracellular	86.29	86.04
CDX81956	Canola	extracellular	72.57	82.74
CDY05531	Canola	cytosol	69.14	80.94
CDY05324	Canola	cytosol	66.0	77.0
AT5G26320.1	Thale cress	vacuole	71.71	71.31
CDX87056	Canola	extracellular	68.0	69.39
CDY19777	Canola	extracellular	68.0	69.19
CDX87055	Canola	golgi, plasma membrane	64.86	68.17
CDY19776	Canola	extracellular, plasma membrane, vacuole	66.0	66.76
CDY04288	Canola	cytosol	13.71	34.29
CDY70350	Canola	plastid	15.43	31.58
KRH68153	Soybean	cytosol	26.86	30.13
CDY44083	Canola	cytosol	26.86	29.84
CDY70349	Canola	cytosol	22.29	29.55
CDX82246	Canola	endoplasmic reticulum, extracellular	31.71	29.44
CDY50084	Canola	extracellular, vacuole	32.0	29.32
CDX99123	Canola	cytosol	16.0	29.17
CDY43081	Canola	extracellular, vacuole	31.71	29.06
CDX82371	Canola	cytosol	25.14	28.48
CDX75913	Canola	cytosol	25.14	28.48
CDX82252	Canola	plastid	29.14	28.41
CDY04290	Canola	extracellular	20.86	28.4
CDY36041	Canola	plasma membrane	28.86	28.37
CDY50083	Canola	endoplasmic reticulum, vacuole	30.57	28.08
CDY43080	Canola	endoplasmic reticulum, vacuole	30.57	28.08
CDX82249	Canola	plasma membrane, vacuole	30.57	27.94
CDY58708	Canola	cytosol, nucleus, plastid	24.57	27.92
CDX83143	Canola	cytosol	25.43	27.81
CDX82251	Canola	extracellular, golgi	30.86	27.07
CDY07146	Canola	cytosol	22.57	26.78
CDY50282	Canola	endoplasmic reticulum, vacuole	29.43	26.75
CDY36040	Canola	extracellular	28.86	26.72
CDY07338	Canola	plastid	22.86	26.49
CDY25415	Canola	vacuole	30.29	26.24
CDY28575	Canola	golgi	22.86	26.23
CDY29822	Canola	vacuole	30.0	26.05
CDX82248	Canola	endoplasmic reticulum, vacuole	32.57	25.91
CDY57407	Canola	cytosol	22.86	25.81
CDY51713	Canola	cytosol	21.71	25.76
CDY28571	Canola	cytosol	16.57	25.66
CDY23783	Canola	cytosol	22.57	25.65
CDY39500	Canola	cytosol	23.43	25.62
CDY04283	Canola	plastid	23.14	25.39
CDX91854	Canola	cytosol	21.43	25.25
CDX95908	Canola	plastid	26.29	25.14
CDX74378	Canola	cytosol	20.57	25.09
CDY12160	Canola	cytosol	22.29	25.08
CDY07340	Canola	plastid	22.86	25.08
CDX81648	Canola	plastid	20.0	24.48
CDX84705	Canola	cytosol	20.86	23.86
CDY60616	Canola	cytosol, mitochondrion, plastid	19.43	23.61
CDX79503	Canola	cytosol	20.57	23.61
CDY34004	Canola	cytosol	19.71	23.0
CDX74582	Canola	extracellular, golgi, plastid	24.57	22.99
CDX91855	Canola	extracellular, plasma membrane, vacuole	12.86	22.73
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	23.71	22.37
CDY07196	Canola	cytosol	18.57	21.89
CDY44084	Canola	cytosol	25.71	21.33
CDY39666	Canola	endoplasmic reticulum, vacuole	20.0	21.21
CDX86065	Canola	cytosol	18.57	20.63
CDY19307	Canola	cytosol	22.86	20.62
CDY48522	Canola	cytosol	16.0	20.07
CDY46265	Canola	plasma membrane	24.29	18.09
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.29	17.9
CDY29329	Canola	plasma membrane	23.71	17.62
CDY37377	Canola	cytosol, plastid	23.71	16.94
CDY36039	Canola	vacuole	30.86	11.73

Protein Annotations

EnsemblPlants:CDX87054	EnsemblPlantsGene:GSBRNA2T00145941001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF214
PFAM:PF00917	PFscan:PS50144	ProteinID:CDX87054	ProteinID:CDX87054.1	SignalP:SignalP-noTM	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI000189CF82	MapMan:35.1	:	:	:

Description

BnaC09g03690D

Coordinates

chrLK031849:-:195876..197945

Molecular Weight (calculated)

39503.9 Da

IEP (calculated)

8.529

GRAVY (calculated)

-0.238

Length

350 amino acids

Sequence
(BLAST)

001: MDSHKRSLGF ISLAFLFITC SSAEFLIQQV TEGKGTENNS SYNVEANLGE TRAFREERPS SKIVTIAGYS VIKGRFEPYE SSVFEAAGYR WRLVLYVIGN
101: KNDGGAGHIS LYVRMEETES LPYGWEVNVD LKLFVHNPKT HKYLTVTDGT VKRYNAAKKE WGFGKLISLS IFENTNNGYI VQDTCSFGAE ILIVKPAEIQ
201: EKVTFISNPP NNVFTWKILR FSSLEDKFYY SADFLVGDRY WRLGFNPKGD GDGRPHALPL FLFAQGFKEN AVATNTWGAV NLRLKNQRNS NHRQLYSAAW
301: YPIRSDYGVG VNNIILLSDL KDPSKGYLVN DAIIFEAEMV KVSVTNIVSV

Best Arabidopsis Sequence Match ( AT5G26280.3 )
(BLAST)

001: MSLCLYKCTL FPNKTISQNM NNQKWSIGFI SLAFLFITSS SAEFIIQQVT KGRGIEYNSS YSLEENLGVT RELREERPSS KIVTITSFSV IKGRGEPYES
101: SVFEAAGYKW RLVLYVNGNK NDGGNDHISL YARIEETNSL PLGWEVNVDL KLFVHNGKLH KYLTVTDGLV KRYNNAKKEW GFGQLIPRST FYNANEGYLD
201: QDTGSFGAEI FIVKPAQQQE KVTFISNPPN NVFTWKILRF STLEDKFYYS DDFLVEDRYW RLGFNPKGDG GGRPHALPIF LFAQGHKANA VATNTWGAVN
301: LRLKNQRSTN HRQIYSAAWY PIGSGYGVGV NNIILLADLN DASKGYLVND AIIFEAEMVK VSITNIVSA

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.