Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040903.1-P | Field mustard | extracellular, vacuole | 96.34 | 96.34 |
| CDY50084 | Canola | extracellular, vacuole | 95.29 | 95.29 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 68.85 | 69.03 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 68.85 | 69.03 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 68.06 | 68.6 |
| CDY29822 | Canola | vacuole | 71.99 | 68.24 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 66.49 | 67.37 |
| CDY25415 | Canola | vacuole | 71.2 | 67.33 |
| CDX83143 | Canola | cytosol | 51.83 | 61.88 |
| CDX82251 | Canola | extracellular, golgi | 64.14 | 61.4 |
| CDX82249 | Canola | plasma membrane, vacuole | 61.52 | 61.36 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 68.59 | 59.55 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 59.69 | 59.22 |
| CDY36040 | Canola | extracellular | 54.97 | 55.56 |
| CDX82252 | Canola | plastid | 51.57 | 54.87 |
| CDY36041 | Canola | plasma membrane | 50.79 | 54.49 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 51.31 | 52.27 |
| CDY34004 | Canola | cytosol | 40.84 | 52.0 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 43.46 | 50.3 |
| CDY70350 | Canola | plastid | 19.9 | 44.44 |
| CDY04288 | Canola | cytosol | 15.97 | 43.57 |
| CDY44083 | Canola | cytosol | 35.6 | 43.17 |
| CDY70349 | Canola | cytosol | 29.06 | 42.05 |
| CDX99123 | Canola | cytosol | 20.68 | 41.15 |
| CDY07338 | Canola | plastid | 32.46 | 41.06 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 53.93 | 40.08 |
| CDY04290 | Canola | extracellular | 26.7 | 39.69 |
| CDY28575 | Canola | golgi | 31.68 | 39.67 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 31.94 | 39.61 |
| CDY07340 | Canola | plastid | 32.72 | 39.19 |
| CDY04283 | Canola | plastid | 32.72 | 39.19 |
| CDY57407 | Canola | cytosol | 31.15 | 38.39 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 35.6 | 36.66 |
| CDX95908 | Canola | plastid | 34.82 | 36.34 |
| CDY28571 | Canola | cytosol | 21.47 | 36.28 |
| CDX81648 | Canola | plastid | 26.96 | 36.01 |
| CDY39500 | Canola | cytosol | 29.84 | 35.62 |
| CDX74582 | Canola | extracellular, golgi, plastid | 33.77 | 34.49 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.63 | 33.43 |
| CDX82371 | Canola | cytosol | 26.7 | 33.01 |
| CDY67361 | Canola | vacuole | 30.1 | 32.86 |
| CDX86065 | Canola | cytosol | 26.96 | 32.7 |
| CDX80557 | Canola | extracellular | 29.84 | 32.57 |
| CDX88229 | Canola | extracellular | 29.58 | 32.29 |
| CDY05532 | Canola | extracellular | 29.32 | 31.91 |
| CDY24977 | Canola | extracellular | 29.32 | 31.91 |
| CDX75913 | Canola | cytosol | 25.65 | 31.72 |
| CDX87054 | Canola | extracellular | 29.06 | 31.71 |
| CDY19775 | Canola | extracellular | 29.06 | 31.71 |
| CDY05531 | Canola | cytosol | 24.61 | 31.44 |
| CDY44084 | Canola | cytosol | 34.55 | 31.28 |
| CDY70520 | Canola | vacuole | 26.96 | 31.02 |
| CDY05324 | Canola | cytosol | 24.08 | 30.67 |
| CDX87055 | Canola | golgi, plasma membrane | 26.44 | 30.33 |
| KRH68153 | Soybean | cytosol | 24.61 | 30.13 |
| CDX87056 | Canola | extracellular | 26.96 | 30.03 |
| CDY19777 | Canola | extracellular | 26.7 | 29.65 |
| CDY19307 | Canola | cytosol | 29.84 | 29.38 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 26.44 | 29.19 |
| CDX74378 | Canola | cytosol | 21.73 | 28.92 |
| CDX91854 | Canola | cytosol | 22.25 | 28.62 |
| CDX81956 | Canola | extracellular | 22.77 | 28.34 |
| CDY29329 | Canola | plasma membrane | 34.03 | 27.6 |
| CDY46265 | Canola | plasma membrane | 33.77 | 27.45 |
| CDY07146 | Canola | cytosol | 20.42 | 26.44 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 13.61 | 26.26 |
| CDY36039 | Canola | vacuole | 61.78 | 25.62 |
| CDY51713 | Canola | cytosol | 19.63 | 25.42 |
| CDY07196 | Canola | cytosol | 19.63 | 25.25 |
| CDY48522 | Canola | cytosol | 17.28 | 23.66 |
| CDY37377 | Canola | cytosol, plastid | 29.58 | 23.06 |
| CDY12160 | Canola | cytosol | 18.59 | 22.83 |
| CDX79503 | Canola | cytosol | 18.06 | 22.62 |
| CDX84705 | Canola | cytosol | 18.06 | 22.55 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 15.45 | 20.49 |
| CDY23783 | Canola | cytosol | 15.71 | 19.48 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | UniProt:A0A078HZV6 | EnsemblPlants:CDY43081 | ProteinID:CDY43081 | ProteinID:CDY43081.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00075933001 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 |
| SUPFAM:SSF49599 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI0004EED1F4 | SEG:seg |
Description
BnaCnng10870DBnaCnng10870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZV6]
Coordinates
chrLK032544:-:204484..206483
Molecular Weight (calculated)
43676.0 Da
IEP (calculated)
7.071
GRAVY (calculated)
-0.445
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNHYTNTVS TVLLLFFLFI SSASSSSFIR QYTDDSNTNF QEENGAVPDA IQGEAHYLRQ HEQEISSRDY KLSVSNTVKG LRDRPPSSYS LKMESFNTLL
101: KSTNADKYVS RPFSAAGYKW TLIVYPNGNK NDNGAGFLSL YVAIDNSTLS PHQEVFVDLR FYVFNRVEKK YLTIQDTDGW RFSYFKTMWG FSQVLPVNTF
201: KDSNNGYLYD GDHCEFGVDV TTPTVFKESE LFTVTDKFYN PKYTWSIQKF STLLEDSYYS DVFSIGGRRW NIKVYPGGSA TGKGKAVSIF LILNANEKFR
301: PYEKIYVGAK LRVLNQRNFK NIEKQIDNWY NGPGYGDGSG WGYNEFIPFS DLKDSSKGFL VNDVLMVQVE IEAISSTKYF PS
101: KSTNADKYVS RPFSAAGYKW TLIVYPNGNK NDNGAGFLSL YVAIDNSTLS PHQEVFVDLR FYVFNRVEKK YLTIQDTDGW RFSYFKTMWG FSQVLPVNTF
201: KDSNNGYLYD GDHCEFGVDV TTPTVFKESE LFTVTDKFYN PKYTWSIQKF STLLEDSYYS DVFSIGGRRW NIKVYPGGSA TGKGKAVSIF LILNANEKFR
301: PYEKIYVGAK LRVLNQRNFK NIEKQIDNWY NGPGYGDGSG WGYNEFIPFS DLKDSSKGFL VNDVLMVQVE IEAISSTKYF PS
001: MENRSFVFIS QMLCFCLETE EVGAEPIQNL DVGHYLQENK EISSRDYKVS ASNAVKGLRD RPPSSYSLKM ESFNTLLKST YTEKYVSRPF SVGGYNWTLV
101: VFPNGNKKDS GSGYLSLYVA IDNSTLGQQE IYADLRFYIF NKNERKYFTI QDTDVWKFSV FKTMWGFSQV LPIDTFKDPT KGYLYDGDHC EFGVDVTMPS
201: LYEKSELFSV TENFLNPRFT WTIRGFSTLL KNSYLSEVFS IGGRSWNIQI NPSGLGTGEG KALSMYLGLN VNEIFRPYEK IYVRAKLRAL NQLNLSNIER
301: ELDIWYNGPG YGEYSWGFPE FIYFPYLTDS SKGFVKNDVL MVQVEMEAIS STKYFPS
101: VFPNGNKKDS GSGYLSLYVA IDNSTLGQQE IYADLRFYIF NKNERKYFTI QDTDVWKFSV FKTMWGFSQV LPIDTFKDPT KGYLYDGDHC EFGVDVTMPS
201: LYEKSELFSV TENFLNPRFT WTIRGFSTLL KNSYLSEVFS IGGRSWNIQI NPSGLGTGEG KALSMYLGLN VNEIFRPYEK IYVRAKLRAL NQLNLSNIER
301: ELDIWYNGPG YGEYSWGFPE FIYFPYLTDS SKGFVKNDVL MVQVEMEAIS STKYFPS
Arabidopsis Description
AT3g20370/MQC12_13 [Source:UniProtKB/TrEMBL;Acc:Q9LTQ5]
SUBAcon: [extracellular,cytosol,peroxisome,golgi,plasma membrane,vacuole,endoplasmic reticulum,plastid]
SUBAcon: [extracellular,cytosol,peroxisome,golgi,plasma membrane,vacuole,endoplasmic reticulum,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.