CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005554.1-P	Field mustard	cytosol	89.58	83.77
CDY12160	Canola	cytosol	88.19	81.67
CDY23783	Canola	cytosol	52.43	49.03
AT2G32880.1	Thale cress	cytosol	51.04	46.23
CDX79503	Canola	cytosol	48.61	45.9
CDX84705	Canola	cytosol	48.61	45.75
AT2G32870.1	Thale cress	cytosol	52.43	36.3
CDY07196	Canola	cytosol	29.86	28.96
CDY48522	Canola	cytosol	27.08	27.96
CDX91854	Canola	cytosol	26.74	25.93
CDX91855	Canola	extracellular, plasma membrane, vacuole	17.71	25.76
CDY51713	Canola	cytosol	26.04	25.42
CDX74378	Canola	cytosol	25.0	25.09
CDY07146	Canola	cytosol	25.69	25.08
CDX99123	Canola	cytosol	16.32	24.48
CDY05324	Canola	cytosol	22.22	21.33
KRH68153	Soybean	cytosol	22.92	21.15
CDY05531	Canola	cytosol	21.88	21.07
CDY28571	Canola	cytosol	16.32	20.8
CDX87056	Canola	extracellular	24.65	20.7
CDY70520	Canola	vacuole	23.61	20.48
CDY19777	Canola	extracellular	24.31	20.35
CDY67361	Canola	vacuole	24.65	20.29
CDX80557	Canola	extracellular	24.31	20.0
CDX87055	Canola	golgi, plasma membrane	22.92	19.82
CDX88229	Canola	extracellular	23.96	19.71
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	23.96	19.71
CDX87054	Canola	extracellular	23.61	19.43
CDY19775	Canola	extracellular	23.61	19.43
CDX81956	Canola	extracellular	20.49	19.22
CDY19776	Canola	extracellular, plasma membrane, vacuole	22.92	19.08
CDY24977	Canola	extracellular	22.92	18.8
CDY05532	Canola	extracellular	22.92	18.8
CDX75913	Canola	cytosol	20.14	18.77
CDX82371	Canola	cytosol	20.14	18.77
CDY44083	Canola	cytosol	20.49	18.73
CDY28575	Canola	golgi	19.44	18.36
CDY04290	Canola	extracellular	16.32	18.29
CDY58708	Canola	cytosol, nucleus, plastid	18.75	17.53
CDX74582	Canola	extracellular, golgi, plastid	22.57	17.38
CDY07340	Canola	plastid	18.75	16.93
CDY70349	Canola	cytosol	15.28	16.67
CDY04283	Canola	plastid	18.4	16.61
CDX83143	Canola	cytosol	18.4	16.56
CDX86065	Canola	cytosol	18.06	16.51
CDY34004	Canola	cytosol	17.01	16.33
CDY07338	Canola	plastid	17.01	16.23
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	20.83	16.17
CDX82246	Canola	endoplasmic reticulum, extracellular	20.83	15.92
CDY50084	Canola	extracellular, vacuole	20.83	15.71
CDY43081	Canola	extracellular, vacuole	20.49	15.45
CDX95908	Canola	plastid	19.1	15.03
CDY04288	Canola	cytosol	7.29	15.0
CDY36041	Canola	plasma membrane	18.06	14.61
CDX82252	Canola	plastid	18.06	14.48
CDY29822	Canola	vacuole	20.14	14.39
CDY57407	Canola	cytosol	15.28	14.19
CDY25415	Canola	vacuole	19.79	14.11
CDX82249	Canola	plasma membrane, vacuole	18.75	14.1
CDY46265	Canola	plasma membrane	22.57	13.83
CDY44084	Canola	cytosol	20.14	13.74
CDY43080	Canola	endoplasmic reticulum, vacuole	18.06	13.65
CDY50083	Canola	endoplasmic reticulum, vacuole	18.06	13.65
CDY29329	Canola	plasma membrane	22.22	13.59
CDY70350	Canola	plastid	7.99	13.45
CDX81648	Canola	plastid	13.19	13.29
CDX82251	Canola	extracellular, golgi	18.4	13.28
CDX82248	Canola	endoplasmic reticulum, vacuole	20.14	13.18
CDY39500	Canola	cytosol	14.58	13.12
CDY39666	Canola	endoplasmic reticulum, vacuole	14.58	12.73
CDY50282	Canola	endoplasmic reticulum, vacuole	17.01	12.73
CDY36040	Canola	extracellular	16.32	12.43
CDY19307	Canola	cytosol	14.93	11.08
CDY37377	Canola	cytosol, plastid	16.32	9.59
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	16.32	9.14
CDY36039	Canola	vacuole	18.06	5.65

Protein Annotations

EnsemblPlants:CDY60616	EnsemblPlantsGene:GSBRNA2T00029859001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY60616	ProteinID:CDY60616.1	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI0004EE7E3C	UniProt:A0A078J3T3	MapMan:35.2	:	:

Description

BnaAnng17000DBnaAnng17000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3T3]

Coordinates

chrLK033899:-:166..1483

Molecular Weight (calculated)

33057.0 Da

IEP (calculated)

8.972

GRAVY (calculated)

-0.037

Length

288 amino acids

Sequence
(BLAST)

001: MFVHLHVFYV DNIKYKKRNN SHFMLVDGMS TLLTESAKNC ESMDFHAFGL KWKFNIRLDL VKDYLSAYLT IADEKCTGSN WGVTCCFNLS VISQIGEFDI
101: CTASVFSFDS NHVSWGVSSL ISQDMLKQKF IVNDKAVFCA EITGVVPLFL NVIINTFSPT MGTAERVKLM KVPRNNSRFT WKITQFSSFS GESHSSYEFT
201: CGPRRWYLEM YPKGYLEGKG NSLSLFLHAS DFVSKAPVEA TSAIYKLRVL DQHKRNHHEI SIIYIYMGIF SKIDLQLKVK HKTNLPFF

Best Arabidopsis Sequence Match ( AT2G32870.2 )
(BLAST)

001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETG MCIYTLNSLI YTFF

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.