CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19776	Canola	extracellular, plasma membrane, vacuole	97.3	93.64
CDX87056	Canola	extracellular	76.88	74.64
CDY19777	Canola	extracellular	76.58	74.13
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	70.27	66.86
CDY70520	Canola	vacuole	66.37	66.57
CDY67361	Canola	vacuole	69.67	66.29
CDX88229	Canola	extracellular	69.67	66.29
CDX80557	Canola	extracellular	68.77	65.43
CDY05531	Canola	cytosol	58.26	64.88
CDX87054	Canola	extracellular	68.17	64.86
CDY19775	Canola	extracellular	67.57	64.29
CDX81956	Canola	extracellular	59.16	64.17
CDY05532	Canola	extracellular	66.97	63.53
CDY24977	Canola	extracellular	66.97	63.53
CDY05324	Canola	cytosol	56.16	62.33
AT5G26320.1	Thale cress	vacuole	61.86	58.52
CDY70350	Canola	plastid	16.52	32.16
KRH68153	Soybean	cytosol	28.53	30.45
CDY04288	Canola	cytosol	12.61	30.0
CDY44083	Canola	cytosol	27.63	29.21
CDX75913	Canola	cytosol	27.03	29.13
CDX82371	Canola	cytosol	27.03	29.13
CDY70349	Canola	cytosol	22.82	28.79
CDX82246	Canola	endoplasmic reticulum, extracellular	32.13	28.38
CDX82249	Canola	plasma membrane, vacuole	32.43	28.2
CDY43080	Canola	endoplasmic reticulum, vacuole	32.13	28.08
CDY50083	Canola	endoplasmic reticulum, vacuole	31.83	27.82
CDX99123	Canola	cytosol	15.92	27.6
CDY28571	Canola	cytosol	18.32	26.99
CDX83143	Canola	cytosol	25.83	26.88
CDX82252	Canola	plastid	28.83	26.74
CDY58708	Canola	cytosol, nucleus, plastid	24.62	26.62
CDX82251	Canola	extracellular, golgi	31.83	26.57
CDY04290	Canola	extracellular	20.42	26.46
CDY43081	Canola	extracellular, vacuole	30.33	26.44
CDY50084	Canola	extracellular, vacuole	30.33	26.44
CDY36041	Canola	plasma membrane	27.93	26.12
CDY50282	Canola	endoplasmic reticulum, vacuole	30.03	25.97
CDY36040	Canola	extracellular	29.43	25.93
CDY07338	Canola	plastid	23.42	25.83
CDY28575	Canola	golgi	23.42	25.57
CDY29822	Canola	vacuole	30.93	25.56
CDY07146	Canola	cytosol	22.52	25.42
CDX81648	Canola	plastid	21.62	25.17
CDY23783	Canola	cytosol	23.12	25.0
CDY25415	Canola	vacuole	30.33	25.0
CDX91854	Canola	cytosol	22.22	24.92
CDY57407	Canola	cytosol	23.12	24.84
CDY51713	Canola	cytosol	21.92	24.75
CDX95908	Canola	plastid	27.03	24.59
CDY39500	Canola	cytosol	23.42	24.38
CDX82248	Canola	endoplasmic reticulum, vacuole	31.83	24.09
CDX74378	Canola	cytosol	20.72	24.04
CDX84705	Canola	cytosol	21.92	23.86
CDX79503	Canola	cytosol	21.62	23.61
CDY12160	Canola	cytosol	21.92	23.47
CDY07340	Canola	plastid	22.22	23.2
CDY60616	Canola	cytosol, mitochondrion, plastid	19.82	22.92
CDY04283	Canola	plastid	21.92	22.88
CDX74582	Canola	extracellular, golgi, plastid	25.23	22.46
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	24.92	22.37
CDY07196	Canola	cytosol	19.82	22.22
CDY34004	Canola	cytosol	19.82	22.0
CDY48522	Canola	cytosol	18.32	21.86
CDX91855	Canola	extracellular, plasma membrane, vacuole	12.61	21.21
CDY39666	Canola	endoplasmic reticulum, vacuole	20.42	20.61
CDX86065	Canola	cytosol	18.92	20.0
CDY44084	Canola	cytosol	25.23	19.91
CDY46265	Canola	plasma membrane	27.33	19.36
CDY19307	Canola	cytosol	22.52	19.33
CDY29329	Canola	plasma membrane	26.73	18.9
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.73	17.32
CDY37377	Canola	cytosol, plastid	24.02	16.33
CDY36039	Canola	vacuole	32.73	11.84

Protein Annotations

EnsemblPlants:CDX87055	EnsemblPlantsGene:GSBRNA2T00145942001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDX87055	ProteinID:CDX87055.1	SignalP:SignalP-noTM	SMART:SM00061
SUPFAM:SSF49599	TMHMM:TMhelix	UniParc:UPI0004EF3A1E	MapMan:35.1	:	:

Description

BnaC09g03700D

Coordinates

chrLK031849:+:208638..210622

Molecular Weight (calculated)

38202.6 Da

IEP (calculated)

9.693

GRAVY (calculated)

-0.246

Length

333 amino acids

Sequence
(BLAST)

001: MENRTWSLRV ICFVFFFITS SSAELLIRQY NINTNLGLTR VLRNQRPSSK IVTIGSFSVI RERSEPYESS VFEASGYKWR LILYVTGNKN DGGNNHVSLY
101: VRIEDTESLP TGWEVDVDLK LFVHNARQRQ YLTVSDETVK RYNQGYREWG FAQLIPLSTF HNPSQGYIVQ DTCSFGAEIF IVKPVKQQER VTFVSNPPNN
201: VFTWRLLHFS TLQNKFYNSP NFLVGDRYWR LETNPRGVGP GAPHLPFNLE AQGFRPNAVA TTTWGAVNLR LRDQLGSNHR LGYSAAWYPI RPGYKVGLNI
301: IYIRDLRGGY LVNDSIVLEA EMVMVSVTNI VPI

Best Arabidopsis Sequence Match ( AT5G26260.1 )
(BLAST)

001: MDSHKWSLGF TLLAFLFITS SSAELIIKQV TQGRGIEYNN SYSLTSNLGV TTRELRDERP SSKIVTITSF SVIKDRGEPY ESSIFEAAGY KWRLVLYVKG
101: NPKGGINNHI SLYARIEETE TLPRGWEVNV DLKLFVHNRK LKKYLSVTDG TVKRYNDAKK EWGFTQLISL PTFYNANEGY LVQDTASFGA EIFIVNPTEK
201: QEKVTFISNP PDNVFTWKIL RFSTLEDKFY YSDDFLVGDR YWRLGFNPKG SGGGRPHALP IFLYAQGHKA NAVVTNTWGA VNLRLKNQRS SNHKQLYSAA
301: WYPIRSDYGV GVNNIILMSE LKDASKGYMV NDAIIFEAEM VKVSVTNIVS V

Arabidopsis Description

F9D12.8 protein [Source:UniProtKB/TrEMBL;Acc:O81493]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.