CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G32880.1	Thale cress	cytosol	61.04	59.12
CDY12160	Canola	cytosol	55.19	54.66
CDX84705	Canola	cytosol	52.6	52.94
CDX79503	Canola	cytosol	51.95	52.46
CDY60616	Canola	cytosol, mitochondrion, plastid	49.03	52.43
AT2G32870.1	Thale cress	cytosol	61.36	45.43
CDY07196	Canola	cytosol	30.52	31.65
CDY48522	Canola	cytosol	28.25	31.18
CDX74378	Canola	cytosol	28.25	30.31
CDX91854	Canola	cytosol	28.57	29.63
CDY51713	Canola	cytosol	28.25	29.49
CDY07146	Canola	cytosol	27.6	28.81
CDX91855	Canola	extracellular, plasma membrane, vacuole	18.18	28.28
CDX99123	Canola	cytosol	16.56	26.56
CDY05531	Canola	cytosol	24.68	25.42
CDY05324	Canola	cytosol	24.03	24.67
CDX75913	Canola	cytosol	24.35	24.27
CDX82371	Canola	cytosol	24.03	23.95
KRH68153	Soybean	cytosol	24.03	23.72
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	26.95	23.71
CDY70520	Canola	vacuole	25.32	23.49
CDY28571	Canola	cytosol	17.21	23.45
CDY67361	Canola	vacuole	26.62	23.43
CDX88229	Canola	extracellular	26.3	23.14
CDX80557	Canola	extracellular	26.3	23.14
CDX87055	Canola	golgi, plasma membrane	25.0	23.12
CDY24977	Canola	extracellular	26.3	23.08
CDY05532	Canola	extracellular	26.3	23.08
CDX87054	Canola	extracellular	25.65	22.57
CDY19776	Canola	extracellular, plasma membrane, vacuole	25.32	22.54
CDX87056	Canola	extracellular	25.0	22.45
CDY19775	Canola	extracellular	25.32	22.29
CDX74582	Canola	extracellular, golgi, plastid	26.95	22.19
CDY19777	Canola	extracellular	24.68	22.09
CDY70349	Canola	cytosol	18.51	21.59
CDX81956	Canola	extracellular	21.43	21.5
CDY04290	Canola	extracellular	16.88	20.23
CDY44083	Canola	cytosol	20.13	19.68
CDY58708	Canola	cytosol, nucleus, plastid	19.48	19.48
CDY04283	Canola	plastid	20.13	19.44
CDY07340	Canola	plastid	19.81	19.12
CDX82252	Canola	plastid	22.08	18.94
CDY07338	Canola	plastid	18.51	18.87
CDY36041	Canola	plasma membrane	21.43	18.54
CDY50282	Canola	endoplasmic reticulum, vacuole	23.05	18.44
CDY28575	Canola	golgi	18.18	18.36
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	22.08	18.33
CDX82246	Canola	endoplasmic reticulum, extracellular	22.4	18.3
CDX95908	Canola	plastid	21.43	18.03
CDX81648	Canola	plastid	16.56	17.83
CDX83143	Canola	cytosol	18.51	17.81
CDX82251	Canola	extracellular, golgi	23.05	17.79
CDX82249	Canola	plasma membrane, vacuole	22.08	17.75
CDX86065	Canola	cytosol	17.53	17.14
CDY25415	Canola	vacuole	22.08	16.83
CDY43080	Canola	endoplasmic reticulum, vacuole	20.78	16.8
CDY29822	Canola	vacuole	21.75	16.63
CDY50083	Canola	endoplasmic reticulum, vacuole	20.45	16.54
CDY57407	Canola	cytosol	16.56	16.45
CDY36040	Canola	extracellular	20.13	16.4
CDY50084	Canola	extracellular, vacuole	20.13	16.23
CDY39666	Canola	endoplasmic reticulum, vacuole	17.21	16.06
CDY29329	Canola	plasma membrane	24.03	15.71
CDY43081	Canola	extracellular, vacuole	19.48	15.71
CDY34004	Canola	cytosol	15.26	15.67
CDY39500	Canola	cytosol	16.23	15.62
CDY46265	Canola	plasma membrane	23.7	15.53
CDX82248	Canola	endoplasmic reticulum, vacuole	21.1	14.77
CDY44084	Canola	cytosol	19.81	14.46
CDY04288	Canola	cytosol	6.49	14.29
CDY70350	Canola	plastid	7.79	14.04
CDY19307	Canola	cytosol	15.91	12.63
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	18.83	11.28
CDY37377	Canola	cytosol, plastid	17.21	10.82
CDY36039	Canola	vacuole	21.43	7.17

Protein Annotations

EnsemblPlants:CDY23783	EnsemblPlantsGene:GSBRNA2T00024144001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY23783	ProteinID:CDY23783.1	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0004EC1610	UniProt:A0A078GGM5	MapMan:35.2	:	:	:

Description

BnaC04g43390DBnaC04g43390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGM5]

Coordinates

chrLK032148:+:542714..545103

Molecular Weight (calculated)

35010.0 Da

IEP (calculated)

7.991

GRAVY (calculated)

-0.228

Length

308 amino acids

Sequence
(BLAST)

001: MGLTSLEGTI KENANNCTNA HFMLIEGMSK LLTRKVKRCG SLDFHVSGLK WKFVIRSDVV KDYISFFLDI TDEKCTGSNW QVNCSVKLSV VSQTGPPDIC
101: KVFVMCFDEK HPSWGQDIFI TDEVLEEKYL LNDKAVFSAE ITNVKPNFLK FTSISRTLGT AESLKLMDVA RKNSRFTWKI TRFSSFDGVT HSSYEFTLGP
201: RTWKLEMYPK GDKGGEGHLS FYLTATDYVT NLPKGPTLAV YKLRLLDQLK RNHKEPEYQA LFAPGANCWG CSKYIPLTEL HNTSNGYLVN DQIYLSVEFL
301: IVSTTEYL

Best Arabidopsis Sequence Match ( AT2G32870.1 )
(BLAST)

001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.