CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99123	Canola	cytosol	49.21	80.73
AT3G46190.2	Thale cress	cytosol	49.84	50.48
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	48.57	41.24
CDY70349	Canola	cytosol	23.81	28.41
CDX74582	Canola	extracellular, golgi, plastid	33.65	28.34
CDY28571	Canola	cytosol	20.32	28.32
CDX82246	Canola	endoplasmic reticulum, extracellular	33.65	28.12
CDY04290	Canola	extracellular	22.86	28.02
CDY50084	Canola	extracellular, vacuole	33.33	27.49
CDY43080	Canola	endoplasmic reticulum, vacuole	32.7	27.03
CDY43081	Canola	extracellular, vacuole	32.7	26.96
CDX83143	Canola	cytosol	27.3	26.88
CDY07338	Canola	plastid	25.71	26.82
CDY50083	Canola	endoplasmic reticulum, vacuole	32.38	26.77
CDX82252	Canola	plastid	30.48	26.74
CDY44083	Canola	cytosol	26.67	26.67
CDY07340	Canola	plastid	26.67	26.33
CDY36041	Canola	plasma membrane	29.21	25.84
CDY04283	Canola	plastid	26.03	25.71
CDY28575	Canola	golgi	24.76	25.57
CDX82249	Canola	plasma membrane, vacuole	30.79	25.33
CDY58708	Canola	cytosol, nucleus, plastid	24.76	25.32
CDX82251	Canola	extracellular, golgi	31.43	24.81
CDY39666	Canola	endoplasmic reticulum, vacuole	25.71	24.55
CDY50282	Canola	endoplasmic reticulum, vacuole	29.84	24.42
CDY34004	Canola	cytosol	23.17	24.33
CDY29822	Canola	vacuole	31.11	24.32
CDX95908	Canola	plastid	28.25	24.32
CDY25415	Canola	vacuole	31.11	24.26
CDX91855	Canola	extracellular, plasma membrane, vacuole	15.24	24.24
CDX82248	Canola	endoplasmic reticulum, vacuole	33.65	24.09
KRH68153	Soybean	cytosol	22.54	22.76
CDY46265	Canola	plasma membrane	33.65	22.55
CDY29329	Canola	plasma membrane	33.65	22.51
CDX74378	Canola	cytosol	20.32	22.3
CDY57407	Canola	cytosol	21.9	22.26
CDX91854	Canola	cytosol	20.95	22.22
CDY07146	Canola	cytosol	20.32	21.69
CDY36040	Canola	extracellular	25.4	21.16
CDY51713	Canola	cytosol	19.37	20.68
CDY70520	Canola	vacuole	21.59	20.48
CDX80557	Canola	extracellular	22.22	20.0
CDY04288	Canola	cytosol	8.89	20.0
CDX81648	Canola	plastid	18.1	19.93
CDY70350	Canola	plastid	10.79	19.88
CDY05531	Canola	cytosol	18.73	19.73
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	21.9	19.71
CDY05324	Canola	cytosol	18.73	19.67
CDX84705	Canola	cytosol	19.05	19.61
CDY39500	Canola	cytosol	19.68	19.38
CDY67361	Canola	vacuole	21.27	19.14
CDY05532	Canola	extracellular	21.27	19.09
CDY24977	Canola	extracellular	21.27	19.09
CDY12160	Canola	cytosol	18.73	18.97
CDX87055	Canola	golgi, plasma membrane	20.0	18.92
CDX88229	Canola	extracellular	20.95	18.86
CDY19775	Canola	extracellular	20.95	18.86
CDY07196	Canola	cytosol	17.78	18.86
CDX82371	Canola	cytosol	18.41	18.77
CDX79503	Canola	cytosol	18.1	18.69
CDX87054	Canola	extracellular	20.63	18.57
CDX81956	Canola	extracellular	18.1	18.57
CDY44084	Canola	cytosol	24.44	18.25
CDY19776	Canola	extracellular, plasma membrane, vacuole	20.0	18.21
CDX75913	Canola	cytosol	17.78	18.12
CDY60616	Canola	cytosol, mitochondrion, plastid	16.51	18.06
CDX87056	Canola	extracellular	19.37	17.78
CDY19777	Canola	extracellular	19.37	17.73
CDY23783	Canola	cytosol	17.14	17.53
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.35	16.15
CDY19307	Canola	cytosol	19.68	15.98
CDY48522	Canola	cytosol	13.65	15.41
CDY37377	Canola	cytosol, plastid	19.68	12.65
CDY36039	Canola	vacuole	30.79	10.53

Protein Annotations

EnsemblPlants:CDX86065	EnsemblPlantsGene:GSBRNA2T00144041001	Gene3D:2.60.210.10	GO:A0A078DA12	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	ProteinID:CDX86065	ProteinID:CDX86065.1	SEG:seg
SMART:SM00061	SUPFAM:SSF49599	TMHMM:TMhelix	UniParc:UPI0004EEC8B1	MapMan:35.2	:

Description

BnaC03g55800D

Coordinates

chrLK031844:+:870138..872537

Molecular Weight (calculated)

36592.2 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.410

Length

315 amino acids

Sequence
(BLAST)

001: MEEKTNRFIM EASANIEVET RGKRSIGWQW PLVALVVVFL AVAANSKIGF NLSDPYSLSF RHQGSHKNEK LKVPPEEIRK LRNSPPSSYR VKFESFTTMM
101: DLVKDGYYES RPYTIGEFNW TFLIYPRIKF FVYNYIHKAY YYYQDLEPIM FHSFETKRGV KQIDVFVAPP FNKWENFSYD ENISNPIFNW NITYVSTIHI
201: DPYTSEPFSS GGRNWVSKVY PNGYGIGTGN SLSPYLLSES NGNDYVRAKL QVLNQYSSNH VEKQVEGWSN VAENGWGFDK FISLSDLEDR TKIFVVNDLL
301: KVEVTIMAFS KTNSI

Best Arabidopsis Sequence Match ( AT3G46190.1 )
(BLAST)

001: MSKYELKVTS KGSQKHEKLK TALLPYWRER PPTTYSVTFE SFGKMMELVN NGYYESLPFT VDGINWTFKI YPNGNSDTTR GLIYLYVKID DSSITDPPLD
101: VYAEIKFFVY NYGISEYYTY QEVEPVKFDS VQQEWGRWID VFVAQRNKSE VFSYDENISN PVFTWSLPNF STLTLDSYTS DPFSSGDRNW VLKVYPNGDG
201: VGKDNSLSLY LLSESNEKNY VRATLRVLNQ IGSDNVEKPV EGWPNAAENG WGYQEFIPLA DLQDATKGFV VDDLLEVEVE IMAISKQTPI N

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.