Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91854 | Canola | cytosol | 91.29 | 88.22 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 43.21 | 62.63 |
| CDY07146 | Canola | cytosol | 58.88 | 57.29 |
| CDY51713 | Canola | cytosol | 58.88 | 57.29 |
| CDY07196 | Canola | cytosol | 50.17 | 48.48 |
| CDY48522 | Canola | cytosol | 44.25 | 45.52 |
| CDX99123 | Canola | cytosol | 20.21 | 30.21 |
| CDX79503 | Canola | cytosol | 31.71 | 29.84 |
| CDX84705 | Canola | cytosol | 31.36 | 29.41 |
| CDY23783 | Canola | cytosol | 30.31 | 28.25 |
| CDY12160 | Canola | cytosol | 29.27 | 27.01 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 25.09 | 25.0 |
| CDX75913 | Canola | cytosol | 26.48 | 24.6 |
| CDX82371 | Canola | cytosol | 25.78 | 23.95 |
| CDY28571 | Canola | cytosol | 18.82 | 23.89 |
| CDY44083 | Canola | cytosol | 26.13 | 23.81 |
| CDY70350 | Canola | plastid | 13.94 | 23.39 |
| CDY28575 | Canola | golgi | 24.74 | 23.28 |
| CDY04288 | Canola | cytosol | 11.15 | 22.86 |
| CDY70349 | Canola | cytosol | 20.91 | 22.73 |
| CDX81648 | Canola | plastid | 22.3 | 22.38 |
| CDY05324 | Canola | cytosol | 23.34 | 22.33 |
| CDY04290 | Canola | extracellular | 19.86 | 22.18 |
| CDY05531 | Canola | cytosol | 23.0 | 22.07 |
| KRH68153 | Soybean | cytosol | 23.69 | 21.79 |
| CDY43081 | Canola | extracellular, vacuole | 28.92 | 21.73 |
| CDY70520 | Canola | vacuole | 25.09 | 21.69 |
| CDY07338 | Canola | plastid | 22.65 | 21.52 |
| CDY50084 | Canola | extracellular, vacuole | 28.57 | 21.47 |
| CDY04283 | Canola | plastid | 23.69 | 21.32 |
| CDY07340 | Canola | plastid | 23.69 | 21.32 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 28.22 | 21.26 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 28.22 | 21.26 |
| CDY36041 | Canola | plasma membrane | 26.13 | 21.07 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 27.53 | 20.95 |
| CDX83143 | Canola | cytosol | 23.34 | 20.94 |
| CDX82252 | Canola | plastid | 26.13 | 20.89 |
| CDY67361 | Canola | vacuole | 25.44 | 20.86 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 25.09 | 20.81 |
| CDX87055 | Canola | golgi, plasma membrane | 24.04 | 20.72 |
| CDY19775 | Canola | extracellular | 25.09 | 20.57 |
| CDX87054 | Canola | extracellular | 25.09 | 20.57 |
| CDX88229 | Canola | extracellular | 25.09 | 20.57 |
| CDX80557 | Canola | extracellular | 25.09 | 20.57 |
| CDX81956 | Canola | extracellular | 21.95 | 20.52 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 26.48 | 20.49 |
| CDX87056 | Canola | extracellular | 24.39 | 20.41 |
| CDX82249 | Canola | plasma membrane, vacuole | 27.18 | 20.37 |
| CDX86065 | Canola | cytosol | 22.3 | 20.32 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 24.74 | 20.29 |
| CDY24977 | Canola | extracellular | 24.74 | 20.23 |
| CDY19777 | Canola | extracellular | 24.04 | 20.06 |
| CDX82251 | Canola | extracellular, golgi | 27.87 | 20.05 |
| CDY05532 | Canola | extracellular | 24.39 | 19.94 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 26.13 | 19.48 |
| CDX95908 | Canola | plastid | 24.74 | 19.4 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 22.3 | 19.39 |
| CDY39500 | Canola | cytosol | 21.6 | 19.38 |
| CDY25415 | Canola | vacuole | 27.18 | 19.31 |
| CDX74582 | Canola | extracellular, golgi, plastid | 25.09 | 19.25 |
| CDY34004 | Canola | cytosol | 19.86 | 19.0 |
| CDY29822 | Canola | vacuole | 26.48 | 18.86 |
| CDY57407 | Canola | cytosol | 20.21 | 18.71 |
| CDY36040 | Canola | extracellular | 24.39 | 18.52 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 19.86 | 18.51 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 27.18 | 17.73 |
| CDY44084 | Canola | cytosol | 23.69 | 16.11 |
| CDY19307 | Canola | cytosol | 20.21 | 14.95 |
| CDY46265 | Canola | plasma membrane | 23.69 | 14.47 |
| CDY29329 | Canola | plasma membrane | 23.34 | 14.23 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 24.04 | 13.42 |
| CDY37377 | Canola | cytosol, plastid | 18.82 | 11.02 |
| CDY36039 | Canola | vacuole | 27.53 | 8.58 |
Protein Annotations
| EnsemblPlants:CDX74378 | EnsemblPlantsGene:GSBRNA2T00112194001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX74378 | ProteinID:CDX74378.1 | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0004EF39A2 | MapMan:35.2 | : | : | : | : |
Description
BnaA03g26690D
Coordinates
chrLK031800:-:2537503..2541041
Molecular Weight (calculated)
32209.9 Da
IEP (calculated)
8.451
GRAVY (calculated)
-0.089
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPISLDGA IIDNCPKKNT KLKKHIFRVE SSVFYLGGYK WKLMVYPNGY SGTVNSNVAI GVEKQASISV NLEVELFVVN QLAPIWHSIG NIGFPPESTW
101: KADSDLMSHA NLESKGFLIG DCCIFGVRFF GVEPAASGTA ECFSVIEKPL SHKVTWMMTR FSSFAPEKVH NSHEFVVGNR KWRIQVHPRG FKEGKDKSFS
201: VYLVGGGFIN NVPQIANTYA LFKLRVLDQV NRDHIEKPML GWLGENPGVI QGFPEYMPLS KLGEPYLVND KLYVGVEFEF ISVTNYC
101: KADSDLMSHA NLESKGFLIG DCCIFGVRFF GVEPAASGTA ECFSVIEKPL SHKVTWMMTR FSSFAPEKVH NSHEFVVGNR KWRIQVHPRG FKEGKDKSFS
201: VYLVGGGFIN NVPQIANTYA LFKLRVLDQV NRDHIEKPML GWLGENPGVI QGFPEYMPLS KLGEPYLVND KLYVGVEFEF ISVTNYC
001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.