CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39500	Canola	cytosol	77.84	94.38
CDY70349	Canola	cytosol	38.92	57.2
CDY70350	Canola	plastid	24.74	56.14
CDY44083	Canola	cytosol	44.33	54.6
CDY04288	Canola	cytosol	19.59	54.29
CDY07338	Canola	plastid	39.18	50.33
CDY28575	Canola	golgi	39.43	50.16
CDY04290	Canola	extracellular	32.99	49.81
CDY57407	Canola	cytosol	39.43	49.35
CDY58708	Canola	cytosol, nucleus, plastid	39.18	49.35
CDY28571	Canola	cytosol	28.35	48.67
CDX95908	Canola	plastid	42.53	45.08
CDX81648	Canola	plastid	32.22	43.71
CDY04283	Canola	plastid	35.57	43.26
AT1G65370.1	Thale cress	cytosol	25.26	43.17
AT2G15710.1	Thale cress	cytosol	40.21	42.74
CDY07340	Canola	plastid	34.79	42.32
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	30.67	40.2
CDY44084	Canola	cytosol	41.75	38.39
AT1G65050.1	Thale cress	cytosol, mitochondrion	15.72	37.65
CDX83143	Canola	cytosol	29.9	36.25
CDY43080	Canola	endoplasmic reticulum, vacuole	32.99	33.6
CDY50083	Canola	endoplasmic reticulum, vacuole	32.47	33.07
CDY36041	Canola	plasma membrane	29.64	32.3
CDX82246	Canola	endoplasmic reticulum, extracellular	31.19	32.1
CDX82252	Canola	plastid	29.64	32.03
CDX82249	Canola	plasma membrane, vacuole	29.9	30.29
CDY43081	Canola	extracellular, vacuole	29.38	29.84
CDX82251	Canola	extracellular, golgi	30.15	29.32
CDY50084	Canola	extracellular, vacuole	28.61	29.06
CDY34004	Canola	cytosol	22.16	28.67
CDY50282	Canola	endoplasmic reticulum, vacuole	28.35	28.57
CDY25415	Canola	vacuole	29.64	28.47
CDY29822	Canola	vacuole	29.38	28.29
CDY37377	Canola	cytosol, plastid	34.79	27.55
CDX82248	Canola	endoplasmic reticulum, vacuole	30.93	27.27
CDX99123	Canola	cytosol	13.4	27.08
KRH68153	Soybean	cytosol	21.65	26.92
CDX75913	Canola	cytosol	21.39	26.86
CDY36040	Canola	extracellular	26.03	26.72
CDX74582	Canola	extracellular, golgi, plastid	25.52	26.47
CDX82371	Canola	cytosol	20.88	26.21
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	24.48	25.61
CDY05531	Canola	cytosol	19.07	24.75
CDY05324	Canola	cytosol	19.07	24.67
CDX88229	Canola	extracellular	21.91	24.29
CDY67361	Canola	vacuole	21.91	24.29
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	21.39	23.71
CDX80557	Canola	extracellular	21.13	23.43
CDX87056	Canola	extracellular	20.36	23.03
CDY39666	Canola	endoplasmic reticulum, vacuole	19.59	23.03
CDY19777	Canola	extracellular	20.36	22.97
CDX87054	Canola	extracellular	20.62	22.86
CDY19775	Canola	extracellular	20.62	22.86
CDY24977	Canola	extracellular	20.62	22.79
CDX87055	Canola	golgi, plasma membrane	19.33	22.52
CDY05532	Canola	extracellular	20.36	22.51
CDX81956	Canola	extracellular	17.78	22.48
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.87	21.79
CDY70520	Canola	vacuole	18.56	21.69
CDY19776	Canola	extracellular, plasma membrane, vacuole	19.07	21.39
CDY46265	Canola	plasma membrane	25.77	21.28
CDY29329	Canola	plasma membrane	25.52	21.02
CDX74378	Canola	cytosol	14.95	20.21
CDX91854	Canola	cytosol	15.21	19.87
CDX86065	Canola	cytosol	15.98	19.68
CDY07146	Canola	cytosol	14.95	19.66
CDY51713	Canola	cytosol	14.69	19.32
CDX91855	Canola	extracellular, plasma membrane, vacuole	9.54	18.69
CDX79503	Canola	cytosol	13.92	17.7
CDY07196	Canola	cytosol	13.14	17.17
CDX84705	Canola	cytosol	13.14	16.67
CDY48522	Canola	cytosol	11.6	16.13
CDY12160	Canola	cytosol	12.89	16.08
CDY23783	Canola	cytosol	12.63	15.91
CDY60616	Canola	cytosol, mitochondrion, plastid	11.08	14.93
CDY36039	Canola	vacuole	30.15	12.7

Protein Annotations

EnsemblPlants:CDY19307	EnsemblPlantsGene:GSBRNA2T00006671001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY19307	ProteinID:CDY19307.1	SUPFAM:SSF49599	UniParc:UPI0004EE5290
UniProt:A0A078G2P9	MapMan:35.2	:	:	:	:

Description

BnaC01g31730DBnaC01g31730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2P9]

Coordinates

chrLK032094:-:671625..674047

Molecular Weight (calculated)

44714.0 Da

IEP (calculated)

5.452

GRAVY (calculated)

-0.193

Length

388 amino acids

Sequence
(BLAST)

001: MCEVTVLVVN CCYKKTEASG LGAICVYSAE HREAYLNKVG SLKLKVEFEG LLVSILRFDS WLCLALTASV SDEETSSLCS FASESTTSQT FWTERPPGSY
101: SLKVQNLAQL IGEKYHTRGF LVNGYNWRLI IYPKGNEKDN GSGYISMYVE IDSTSEVFAY LTFFVYNKKV NKYLCIQDTQ VKRFNALKKV WGSSQMLPLE
201: LFNDPKNGYI FEEDQCEFGV DVSHVTIDST LTNWEIVSFN ENFCYSKFFF SVKNFTMLNE HLYYMSNTFS VGGKTWVLRF YRKCFSTLDD KWISIFLHLA
301: DNERLLPDER IYTRGHFRVL DPCRSNHITE KFNCWHDQSN SGCGHDKVVS MDKLREVYLD EDDTLSVAIE FEVMSATSYS PINYSAII

Best Arabidopsis Sequence Match ( AT1G69650.1 )
(BLAST)

001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.