Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001786.1-P | Field mustard | extracellular, golgi | 100.0 | 100.0 |
| CDY36040 | Canola | extracellular | 80.7 | 85.19 |
| CDX82249 | Canola | plasma membrane, vacuole | 77.94 | 81.2 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 73.43 | 76.1 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 62.91 | 65.88 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 62.66 | 65.62 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 60.65 | 64.19 |
| CDY43081 | Canola | extracellular, vacuole | 61.4 | 64.14 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 60.65 | 63.85 |
| CDY50084 | Canola | extracellular, vacuole | 60.15 | 62.83 |
| CDY29822 | Canola | vacuole | 63.16 | 62.53 |
| CDY25415 | Canola | vacuole | 60.9 | 60.15 |
| CDX82252 | Canola | plastid | 51.13 | 56.82 |
| CDX83143 | Canola | cytosol | 45.11 | 56.25 |
| CDY36041 | Canola | plasma membrane | 49.87 | 55.9 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 61.4 | 55.68 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 48.37 | 51.47 |
| CDY34004 | Canola | cytosol | 36.09 | 48.0 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 37.34 | 45.15 |
| CDY70350 | Canola | plastid | 19.3 | 45.03 |
| CDY04288 | Canola | cytosol | 15.54 | 44.29 |
| CDY70349 | Canola | cytosol | 28.07 | 42.42 |
| CDY44083 | Canola | cytosol | 32.33 | 40.95 |
| CDX99123 | Canola | cytosol | 19.05 | 39.58 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 30.33 | 39.29 |
| CDY57407 | Canola | cytosol | 29.07 | 37.42 |
| CDY07338 | Canola | plastid | 28.32 | 37.42 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 48.12 | 37.35 |
| CDX81648 | Canola | plastid | 26.32 | 36.71 |
| CDY07340 | Canola | plastid | 29.07 | 36.36 |
| CDX95908 | Canola | plastid | 33.33 | 36.34 |
| CDY39500 | Canola | cytosol | 29.07 | 36.25 |
| CDY04290 | Canola | extracellular | 23.31 | 36.19 |
| CDX74582 | Canola | extracellular, golgi, plastid | 33.83 | 36.1 |
| CDY28575 | Canola | golgi | 27.57 | 36.07 |
| CDY04283 | Canola | plastid | 28.82 | 36.05 |
| CDY28571 | Canola | cytosol | 20.3 | 35.84 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 32.08 | 34.5 |
| CDY36039 | Canola | vacuole | 78.2 | 33.88 |
| CDX82371 | Canola | cytosol | 25.81 | 33.33 |
| CDX75913 | Canola | cytosol | 24.81 | 32.04 |
| CDX87055 | Canola | golgi, plasma membrane | 26.57 | 31.83 |
| CDX86065 | Canola | cytosol | 24.81 | 31.43 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 27.07 | 31.21 |
| CDY19775 | Canola | extracellular | 27.07 | 30.86 |
| CDX87054 | Canola | extracellular | 27.07 | 30.86 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.07 | 30.86 |
| CDX80557 | Canola | extracellular | 26.82 | 30.57 |
| CDY19307 | Canola | cytosol | 29.32 | 30.15 |
| CDY67361 | Canola | vacuole | 26.32 | 30.0 |
| CDY19777 | Canola | extracellular | 25.81 | 29.94 |
| CDY05532 | Canola | extracellular | 26.32 | 29.91 |
| CDY24977 | Canola | extracellular | 26.32 | 29.91 |
| CDY05531 | Canola | cytosol | 22.31 | 29.77 |
| CDX87056 | Canola | extracellular | 25.56 | 29.74 |
| KRH68153 | Soybean | cytosol | 23.06 | 29.49 |
| CDX88229 | Canola | extracellular | 25.81 | 29.43 |
| CDY44084 | Canola | cytosol | 31.08 | 29.38 |
| CDY05324 | Canola | cytosol | 21.55 | 28.67 |
| CDX91854 | Canola | cytosol | 21.05 | 28.28 |
| CDY70520 | Canola | vacuole | 23.31 | 28.01 |
| CDX74378 | Canola | cytosol | 20.05 | 27.87 |
| CDY46265 | Canola | plasma membrane | 32.58 | 27.66 |
| CDY29329 | Canola | plasma membrane | 32.58 | 27.6 |
| CDX81956 | Canola | extracellular | 20.8 | 27.04 |
| CDY07146 | Canola | cytosol | 19.8 | 26.78 |
| CDY51713 | Canola | cytosol | 19.3 | 26.1 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 12.78 | 25.76 |
| CDY07196 | Canola | cytosol | 18.05 | 24.24 |
| CDY37377 | Canola | cytosol, plastid | 29.07 | 23.67 |
| CDY23783 | Canola | cytosol | 17.79 | 23.05 |
| CDX79503 | Canola | cytosol | 17.54 | 22.95 |
| CDY48522 | Canola | cytosol | 15.79 | 22.58 |
| CDX84705 | Canola | cytosol | 17.04 | 22.22 |
| CDY12160 | Canola | cytosol | 16.79 | 21.54 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 13.28 | 18.4 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EnsemblPlants:CDX82251 | ProteinID:CDX82251 | ProteinID:CDX82251.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00137353001 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 | SUPFAM:SSF49599 |
| SignalP:SignalP-TM | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI00025405C5 | SEG:seg | : |
Description
BnaA03g35700D
Coordinates
chrLK031828:-:228607..239308
Molecular Weight (calculated)
45788.0 Da
IEP (calculated)
6.890
GRAVY (calculated)
-0.336
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSYYTYTIY VVYLLFCLLI TSASAQSLIR QSTDDRNTPL QQENGAKAVS ILGEAHYLDK DDLEISSSDY KVSPSNQVTG MRSRPPMSYS LKMESFNTLL
101: QSNNTERYES RPFPVGGYNW SLIVYPNGNR EDSGSGFISL YVAIDNSTLV SSHQEVFADL RFYVFKRTER KFFTVQDTNV WRYNIFKTMW GFPRVLPLDT
201: FRNPSNGYLF NGDHCEFGVD VTIHTPFQRS ELFTVARNFP NPRFTWNIQR FSTLLGETYF SDVFSIGGRN WNIQVHPSGA VTGEGRALSM YLLLNANERF
301: RPYEKIYVRA QLRVLNQRAS SQWRTIERPI DHWFTGPGLG WGYDEFVPLA DLRDPERGYL VNDKLMVQVE MEAISSTSFG TGASSFLVEL TPVHPLALP
101: QSNNTERYES RPFPVGGYNW SLIVYPNGNR EDSGSGFISL YVAIDNSTLV SSHQEVFADL RFYVFKRTER KFFTVQDTNV WRYNIFKTMW GFPRVLPLDT
201: FRNPSNGYLF NGDHCEFGVD VTIHTPFQRS ELFTVARNFP NPRFTWNIQR FSTLLGETYF SDVFSIGGRN WNIQVHPSGA VTGEGRALSM YLLLNANERF
301: RPYEKIYVRA QLRVLNQRAS SQWRTIERPI DHWFTGPGLG WGYDEFVPLA DLRDPERGYL VNDKLMVQVE MEAISSTSFG TGASSFLVEL TPVHPLALP
001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
Arabidopsis Description
AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [extracellular,endoplasmic reticulum]
SUBAcon: [extracellular,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.