Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005554.1-P | Field mustard | cytosol | 93.89 | 94.81 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 81.67 | 88.19 |
| CDY23783 | Canola | cytosol | 54.66 | 55.19 |
| AT2G32880.1 | Thale cress | cytosol | 54.98 | 53.77 |
| CDX84705 | Canola | cytosol | 52.73 | 53.59 |
| CDX79503 | Canola | cytosol | 52.09 | 53.11 |
| AT2G32870.1 | Thale cress | cytosol | 54.98 | 41.11 |
| CDY07196 | Canola | cytosol | 30.55 | 31.99 |
| CDY48522 | Canola | cytosol | 27.65 | 30.82 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 19.61 | 30.81 |
| CDX91854 | Canola | cytosol | 28.62 | 29.97 |
| CDX99123 | Canola | cytosol | 18.33 | 29.69 |
| CDX74378 | Canola | cytosol | 27.01 | 29.27 |
| CDY51713 | Canola | cytosol | 27.65 | 29.15 |
| CDY07146 | Canola | cytosol | 27.33 | 28.81 |
| CDY05531 | Canola | cytosol | 23.47 | 24.41 |
| CDY28571 | Canola | cytosol | 17.36 | 23.89 |
| KRH68153 | Soybean | cytosol | 23.79 | 23.72 |
| CDY05324 | Canola | cytosol | 22.83 | 23.67 |
| CDY67361 | Canola | vacuole | 25.4 | 22.57 |
| CDX87056 | Canola | extracellular | 24.76 | 22.45 |
| CDY70520 | Canola | vacuole | 23.79 | 22.29 |
| CDX87054 | Canola | extracellular | 25.08 | 22.29 |
| CDY19775 | Canola | extracellular | 25.08 | 22.29 |
| CDY19777 | Canola | extracellular | 24.44 | 22.09 |
| CDX88229 | Canola | extracellular | 24.76 | 22.0 |
| CDX87055 | Canola | golgi, plasma membrane | 23.47 | 21.92 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 24.44 | 21.71 |
| CDX80557 | Canola | extracellular | 24.44 | 21.71 |
| CDY24977 | Canola | extracellular | 24.44 | 21.65 |
| CDY05532 | Canola | extracellular | 24.44 | 21.65 |
| CDY44083 | Canola | cytosol | 21.54 | 21.27 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 23.47 | 21.1 |
| CDX82371 | Canola | cytosol | 20.9 | 21.04 |
| CDX75913 | Canola | cytosol | 20.9 | 21.04 |
| CDY04290 | Canola | extracellular | 17.36 | 21.01 |
| CDY28575 | Canola | golgi | 20.58 | 20.98 |
| CDX74582 | Canola | extracellular, golgi, plastid | 25.08 | 20.86 |
| CDX81956 | Canola | extracellular | 20.58 | 20.85 |
| CDY70349 | Canola | cytosol | 17.04 | 20.08 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 19.29 | 19.48 |
| CDY07340 | Canola | plastid | 19.94 | 19.44 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 22.83 | 19.14 |
| CDY04283 | Canola | plastid | 19.61 | 19.12 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 23.15 | 19.1 |
| CDX83143 | Canola | cytosol | 19.61 | 19.06 |
| CDX86065 | Canola | cytosol | 18.97 | 18.73 |
| CDY50084 | Canola | extracellular, vacuole | 22.83 | 18.59 |
| CDY43081 | Canola | extracellular, vacuole | 22.83 | 18.59 |
| CDY07338 | Canola | plastid | 17.68 | 18.21 |
| CDY36041 | Canola | plasma membrane | 20.58 | 17.98 |
| CDX82252 | Canola | plastid | 20.58 | 17.83 |
| CDY29822 | Canola | vacuole | 22.51 | 17.37 |
| CDY34004 | Canola | cytosol | 16.72 | 17.33 |
| CDY25415 | Canola | vacuole | 22.19 | 17.08 |
| CDX82249 | Canola | plasma membrane, vacuole | 20.9 | 16.97 |
| CDX82251 | Canola | extracellular, golgi | 21.54 | 16.79 |
| CDX95908 | Canola | plastid | 19.61 | 16.67 |
| CDY57407 | Canola | cytosol | 16.4 | 16.45 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 17.36 | 16.36 |
| CDY46265 | Canola | plasma membrane | 24.44 | 16.17 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 19.61 | 16.01 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 19.61 | 16.01 |
| CDY29329 | Canola | plasma membrane | 24.12 | 15.92 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 22.51 | 15.91 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 19.61 | 15.84 |
| CDY36040 | Canola | extracellular | 18.97 | 15.61 |
| CDY44084 | Canola | cytosol | 20.9 | 15.4 |
| CDX81648 | Canola | plastid | 14.15 | 15.38 |
| CDY39500 | Canola | cytosol | 15.76 | 15.31 |
| CDY04288 | Canola | cytosol | 6.43 | 14.29 |
| CDY19307 | Canola | cytosol | 16.08 | 12.89 |
| CDY70350 | Canola | plastid | 6.75 | 12.28 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.01 | 10.89 |
| CDY37377 | Canola | cytosol, plastid | 17.04 | 10.82 |
| CDY36039 | Canola | vacuole | 20.26 | 6.84 |
Protein Annotations
| EnsemblPlants:CDY12160 | EnsemblPlantsGene:GSBRNA2T00061163001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY12160 | ProteinID:CDY12160.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0004EED108 | UniProt:A0A078FCR7 | MapMan:35.2 | : | : |
Description
BnaC04g11900DBnaC04g11900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCR7]
Coordinates
chrLK032018:-:80046..81514
Molecular Weight (calculated)
35763.9 Da
IEP (calculated)
8.741
GRAVY (calculated)
-0.121
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVHLHVFYV DYIKYKKRNN SHFMLVDGMS TLMTENAKNC ESMNFHAFGL RWKFNIRLDL VKDYLSAYLT IADEKCTGSN WGVTCWFNLS VISQIGDLDI
101: CTASVFSFDS NHVSWGVSSL ISQEMLKQKF IVNDKAVFCA EITGVIPLFL NVIINTFSPT MGTAERVKLM KVPRNNSRFT WKITQFSSFS GESHSSYEFT
201: CGPRRWYLEM YPKGYLEGKG NSLSLFLHAS DFVSKAPVEA TSAIYKLRVL DQHKRNHHEI NTAHRFTSNT RWGFNKFLEL GELHKASNGF LVNDAIYIGV
301: EFLSMATREY L
101: CTASVFSFDS NHVSWGVSSL ISQEMLKQKF IVNDKAVFCA EITGVIPLFL NVIINTFSPT MGTAERVKLM KVPRNNSRFT WKITQFSSFS GESHSSYEFT
201: CGPRRWYLEM YPKGYLEGKG NSLSLFLHAS DFVSKAPVEA TSAIYKLRVL DQHKRNHHEI NTAHRFTSNT RWGFNKFLEL GELHKASNGF LVNDAIYIGV
301: EFLSMATREY L
001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.