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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04288 Canola cytosol 35.61 67.14
CDY04290 Canola extracellular 64.02 65.76
CDY28571 Canola cytosol 53.41 62.39
CDY70350 Canola plastid 39.77 61.4
CDY44083 Canola cytosol 68.94 57.78
CDY07338 Canola plastid 65.53 57.28
CDX95908 Canola plastid 78.79 56.83
CDX81648 Canola plastid 59.47 54.9
CDY58708 Canola cytosol, nucleus, plastid 62.88 53.9
CDY28575 Canola golgi 59.85 51.8
CDY07340 Canola plastid 58.33 48.28
CDY04283 Canola plastid 58.33 48.28
CDY57407 Canola cytosol 54.92 46.77
CDY39500 Canola cytosol 56.06 46.25
CDY44084 Canola cytosol 66.67 41.71
CDX99123 Canola cytosol 28.41 39.06
CDY19307 Canola cytosol 57.2 38.92
CDX83143 Canola cytosol 42.42 35.0
CDX82246 Canola endoplasmic reticulum, extracellular 44.7 31.3
CDY43080 Canola endoplasmic reticulum, vacuole 45.08 31.23
CDY50083 Canola endoplasmic reticulum, vacuole 44.32 30.71
CDY36041 Canola plasma membrane 40.91 30.34
CDX82252 Canola plastid 40.15 29.53
CDY43081 Canola extracellular, vacuole 42.05 29.06
CDX82249 Canola plasma membrane, vacuole 42.05 28.98
CDY50084 Canola extracellular, vacuole 41.67 28.8
CDY36040 Canola extracellular 40.91 28.57
CDX82251 Canola extracellular, golgi 42.42 28.07
CDY50282 Canola endoplasmic reticulum, vacuole 40.53 27.79
CDX82248 Canola endoplasmic reticulum, vacuole 46.21 27.73
CDX74582 Canola extracellular, golgi, plastid 38.26 27.01
CDY25415 Canola vacuole 41.29 26.98
KRH68153 Soybean cytosol 31.82 26.92
CDY29822 Canola vacuole 40.91 26.8
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 37.12 26.42
CDY34004 Canola cytosol 29.92 26.33
CDY37377 Canola cytosol, plastid 48.48 26.12
CDX82371 Canola cytosol 29.17 24.92
CDX75913 Canola cytosol 29.17 24.92
CDY05531 Canola cytosol 27.65 24.41
CDY05324 Canola cytosol 27.65 24.33
CDX86065 Canola cytosol 28.41 23.81
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 30.68 23.14
CDX88229 Canola extracellular 30.3 22.86
CDX87055 Canola golgi, plasma membrane 28.79 22.82
CDY24977 Canola extracellular 30.3 22.79
CDY67361 Canola vacuole 29.92 22.57
CDX80557 Canola extracellular 29.92 22.57
CDY05532 Canola extracellular 29.92 22.51
CDX87054 Canola extracellular 29.55 22.29
CDY19776 Canola extracellular, plasma membrane, vacuole 29.17 22.25
CDY19775 Canola extracellular 29.17 22.0
CDX87056 Canola extracellular 27.65 21.28
CDY19777 Canola extracellular 27.65 21.22
CDY39666 Canola endoplasmic reticulum, vacuole 26.52 21.21
CDY70520 Canola vacuole 26.52 21.08
CDY46265 Canola plasma membrane 37.5 21.06
CDY29329 Canola plasma membrane 37.5 21.02
CDX74378 Canola cytosol 22.73 20.91
CDX81956 Canola extracellular 24.24 20.85
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 40.53 20.82
CDY07146 Canola cytosol 23.11 20.68
CDX91854 Canola cytosol 23.11 20.54
CDX91855 Canola extracellular, plasma membrane, vacuole 15.15 20.2
CDY07196 Canola cytosol 22.35 19.87
CDY51713 Canola cytosol 21.97 19.66
CDX79503 Canola cytosol 21.97 19.02
CDY48522 Canola cytosol 19.7 18.64
CDX84705 Canola cytosol 21.59 18.63
CDY23783 Canola cytosol 21.59 18.51
CDY12160 Canola cytosol 20.08 17.04
CDY60616 Canola cytosol, mitochondrion, plastid 16.67 15.28
CDY36039 Canola vacuole 42.42 12.16
Protein Annotations
EnsemblPlants:CDY70349EnsemblPlantsGene:GSBRNA2T00098210001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDY70349ProteinID:CDY70349.1SMART:SM00061SUPFAM:SSF49599
UniParc:UPI0004EEC643UniProt:A0A078JU98MapMan:35.2:::
Description
BnaCnng67930DBnaCnng67930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JU98]
Coordinates
chrLK041849:+:146..1278
Molecular Weight (calculated)
30534.4 Da
IEP (calculated)
6.527
GRAVY (calculated)
-0.306
Length
264 amino acids
Sequence
(BLAST)
001: MQYCCLIQIR RLIVYPNGNG KDDGSGFISM YVEIDSKITT EVFAELRFFV YNKKENKYFT IQDLEVRRFN ALKTVWGLQQ FLPLDTFNDL KNGYIFEGGH
101: CEFGVDVIVA SPLTNWEILS FDEKLSNPKF SWAVKKLSDL KEHVYTSDSF SMGGRQWVLK MYPKGDSGSD GKWLSFYLFL AAGDTLKADE KVFRQGHIRV
201: LDPLGSNHIE LKTNRWVERS NTGWGWDQFL SLAELRKSYL DKKDTLNVEV EFEVVSATKY STII
Best Arabidopsis Sequence Match ( AT1G69660.1 )
(BLAST)
001: MESTPPTEAF AELRFYVYNK KENKYFTIQD VEVKRFNALR MVWGLLKVLS YDTFTNPENG FIFEGGECEF GVDVLVAPPL TNWEILSFDE KLSPPKFSWN
101: LKNFSELKED VYTSNKYPMG GKEWVLKLYP KGNSRADGKY LSLYVHLADS ETLKSDEKNF KQGHVRVLNP LGSNHVEVQS SCWYKESSRG WGWDHFLSIA
201: NLRKTYLDKE DALNVEIEFK VVSATKYSPI I
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.