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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82371 Canola cytosol 95.79 95.79
AT3G17380.1 Thale cress cytosol 89.64 89.64
KRH50639 Soybean cytosol, nucleus 54.37 54.19
KRH02437 Soybean cytosol 49.84 51.85
PGSC0003DMT400022188 Potato cytosol 38.19 48.76
Solyc04g008530.1.1 Tomato cytosol 28.48 35.48
CDY70350 Canola plastid 16.5 29.82
CDY04288 Canola cytosol 13.27 29.29
CDY44083 Canola cytosol 29.77 29.21
CDY70349 Canola cytosol 24.92 29.17
CDY07338 Canola plastid 27.83 28.48
CDY57407 Canola cytosol 28.48 28.39
CDX99123 Canola cytosol 17.48 28.12
CDY28571 Canola cytosol 20.06 27.43
CDY05324 Canola cytosol 26.54 27.33
CDY58708 Canola cytosol, nucleus, plastid 27.18 27.27
CDX91854 Canola cytosol 26.21 27.27
CDX83143 Canola cytosol 28.16 27.19
CDX87055 Canola golgi, plasma membrane 29.13 27.03
CDY28575 Canola golgi 26.54 26.89
CDY04290 Canola extracellular 22.33 26.85
CDY07146 Canola cytosol 25.57 26.78
CDY05531 Canola cytosol 25.89 26.76
CDX95908 Canola plastid 31.39 26.5
CDX74378 Canola cytosol 24.6 26.48
CDY51713 Canola cytosol 25.24 26.44
CDY19776 Canola extracellular, plasma membrane, vacuole 29.45 26.3
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 29.77 26.29
CDY67361 Canola vacuole 29.77 26.29
CDY04283 Canola plastid 26.86 26.02
CDY07340 Canola plastid 26.86 26.02
CDX88229 Canola extracellular 29.45 26.0
CDY70520 Canola vacuole 27.83 25.9
CDX82246 Canola endoplasmic reticulum, extracellular 31.39 25.73
CDY43080 Canola endoplasmic reticulum, vacuole 31.72 25.72
CDY50083 Canola endoplasmic reticulum, vacuole 31.72 25.72
CDX80557 Canola extracellular 29.13 25.71
CDY43081 Canola extracellular, vacuole 31.72 25.65
CDY07196 Canola cytosol 24.6 25.59
CDY48522 Canola cytosol 22.98 25.45
CDY50084 Canola extracellular, vacuole 31.39 25.39
CDY39500 Canola cytosol 26.21 25.31
CDY19775 Canola extracellular 28.48 25.14
CDX87054 Canola extracellular 28.48 25.14
CDY24977 Canola extracellular 28.48 25.07
CDX82249 Canola plasma membrane, vacuole 31.07 25.07
CDX81648 Canola plastid 22.98 24.83
CDX82251 Canola extracellular, golgi 32.04 24.81
CDY05532 Canola extracellular 28.16 24.79
CDX82252 Canola plastid 28.48 24.51
CDX87056 Canola extracellular 27.18 24.49
CDY19777 Canola extracellular 27.18 24.42
CDY23783 Canola cytosol 24.27 24.35
CDY34004 Canola cytosol 23.3 24.0
CDX81956 Canola extracellular 23.62 23.78
CDY36041 Canola plasma membrane 27.18 23.6
CDY36040 Canola extracellular 28.8 23.55
CDY50282 Canola endoplasmic reticulum, vacuole 29.13 23.38
CDX79503 Canola cytosol 22.98 23.28
CDX91855 Canola extracellular, plasma membrane, vacuole 14.89 23.23
CDX84705 Canola cytosol 22.98 23.2
CDY29822 Canola vacuole 30.1 23.08
CDX74582 Canola extracellular, golgi, plastid 27.83 22.99
CDY25415 Canola vacuole 29.77 22.77
CDX82248 Canola endoplasmic reticulum, vacuole 31.72 22.27
CDY44084 Canola cytosol 30.1 22.04
CDY19307 Canola cytosol 26.86 21.39
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 25.57 21.29
CDY12160 Canola cytosol 21.04 20.9
CDY60616 Canola cytosol, mitochondrion, plastid 18.77 20.14
CDY39666 Canola endoplasmic reticulum, vacuole 21.04 19.7
CDY29329 Canola plasma membrane 29.45 19.32
CDY46265 Canola plasma membrane 28.8 18.94
CDX86065 Canola cytosol 18.12 17.78
CDY37377 Canola cytosol, plastid 26.54 16.73
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 27.51 16.54
CDY36039 Canola vacuole 30.74 10.31
Protein Annotations
EnsemblPlants:CDX75913EnsemblPlantsGene:GSBRNA2T00123926001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDX75913ProteinID:CDX75913.1SMART:SM00061SUPFAM:SSF49599
UniParc:UPI0004EBDA97MapMan:35.1::::
Description
BnaC03g39960D
Coordinates
chrLK031805:+:1802160..1803794
Molecular Weight (calculated)
34933.5 Da
IEP (calculated)
7.628
GRAVY (calculated)
-0.277
Length
309 amino acids
Sequence
(BLAST)
001: MASFGDHDDI IKSVSDAPPT HYMVKIESLS LLTKHAIERY ETEIFEAGGY KWKLVLYPNG NKSKNIKDHV SVYLALADSS SLGPGWEVSA VFRLYLLDQN
101: KDSYLILQGK ERRFHTVKRE WGFDKFIPTA TFFNASNGYL MEDTCMFGAD VFVSKERRNG RGECLSMIKD ATSSKHVWKI ENFSKLDNES YDSNAFFAGD
201: RKWKIRLYPS GTKQGTGTHL SIYLILADPE TVSDGTKIFT EFTVRIYDQL QGRHIAGKVT KWFSGSSLEN GWVKYVSMVY FTQPSSGLLL KDVCLVEADV
301: CVHGITSAL
Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.