Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075825 | Potato | cytosol | 66.94 | 65.35 |
| PGSC0003DMT400092776 | Potato | cytosol | 76.21 | 63.85 |
| PGSC0003DMT400087617 | Potato | cytosol | 61.29 | 59.61 |
| PGSC0003DMT400091007 | Potato | cytosol | 54.03 | 36.41 |
| PGSC0003DMT400075830 | Potato | mitochondrion | 64.52 | 32.32 |
| Bra001660.1-P | Field mustard | cytosol | 34.68 | 29.97 |
| AT3G17380.1 | Thale cress | cytosol | 36.69 | 29.45 |
| CDX82371 | Canola | cytosol | 36.29 | 29.13 |
| CDX75913 | Canola | cytosol | 35.48 | 28.48 |
| KRH50639 | Soybean | cytosol, nucleus | 34.68 | 27.74 |
| KRH02437 | Soybean | cytosol | 33.06 | 27.61 |
Protein Annotations
| EnsemblPlants:Solyc04g008530.1.1 | EnsemblPlantsGene:Solyc04g008530.1 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000276714D |
| UniProt:K4BP09 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:2154141..2155727
Molecular Weight (calculated)
28545.9 Da
IEP (calculated)
8.689
GRAVY (calculated)
-0.483
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MENITNSLPT RYLWKIESFS LLSQNGTSKY ESNVFESGGF NWTTKFLFDA GMERRFHNIK TVWGFSKCIS HETLKDPTNG YVVDDKCVVG VDIYVVKKQG
101: IGECMSLLNG TEPYKHEWKI TEFSKLKRKV YYSEQFIRDG YKWKLLLYPT GDNRENGKNI SVYLESVDAK GFNRQKRVKA KFSISLKNQN GGEHHKRSGG
201: ANWYSAASYS WGWSSFMRCC ELNDRFLIED CCVLEAEVSV VGVVNCLT
101: IGECMSLLNG TEPYKHEWKI TEFSKLKRKV YYSEQFIRDG YKWKLLLYPT GDNRENGKNI SVYLESVDAK GFNRQKRVKA KFSISLKNQN GGEHHKRSGG
201: ANWYSAASYS WGWSSFMRCC ELNDRFLIED CCVLEAEVSV VGVVNCLT
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.