CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02437	Soybean	cytosol	86.45	90.24
CDX75913	Canola	cytosol	54.19	54.37
CDX82371	Canola	cytosol	54.19	54.37
AT3G17380.1	Thale cress	cytosol	53.87	54.05
Bra001660.1-P	Field mustard	cytosol	50.0	54.01
PGSC0003DMT400022188	Potato	cytosol	38.71	49.59
KRH68153	Soybean	cytosol	40.0	39.74
KRH66589	Soybean	cytosol	39.35	37.77
Solyc04g008530.1.1	Tomato	cytosol	27.74	34.68

Protein Annotations

EMBL:ACUP02004709	EnsemblPlants:KRH50639	EnsemblPlantsGene:GLYMA_07G233700	EntrezGene:100779090	Gene3D:2.60.210.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like
PANTHER:PTHR26379	PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	ProteinID:KRH50639	ProteinID:KRH50639.1
SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002338A91	UniProt:I1KMK0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr7:+:41481796..41485221

Molecular Weight (calculated)

35257.1 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.285

Length

310 amino acids

Sequence
(BLAST)

001: MGSQDAIPRS TVDAPPAHYV MKIQSFSLLA KNSIERYESG KFEAGGYKWK LVLYPSGNKS KNIREHISLY LALDDTSSLH HGWEIYVNFR FFLHDQTNDN
101: YLVGPDTVRN ERRFHKMKAE WGIDQFIPLR DFNLASKGYL VDDTCAFGAE VFVCKERSTG KGECLVMMKE AILYKHLYEF DNLSKLDLEC YDSKPFNAGN
201: FKWKIKLYPK GKGAELGNYL SLYLALADPS ALSPCSKIYA QITLRILDQK QAKHHFGKAN YWFSASSHEN GAAIFMPINN FTNQNFGYVV KDSCFVEAEV
301: IILGVVDALS

Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)

001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.