Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0091g01130.t01 | Wine grape | cytosol | 48.3 | 47.56 |
| VIT_03s0091g01170.t01 | Wine grape | cytosol | 45.82 | 47.13 |
| VIT_03s0091g01140.t01 | Wine grape | cytosol | 47.99 | 46.97 |
| VIT_03s0091g01110.t01 | Wine grape | cytosol, plastid | 46.44 | 46.73 |
| VIT_03s0091g01120.t01 | Wine grape | cytosol | 23.22 | 44.38 |
| KRH50639 | Soybean | cytosol, nucleus | 37.77 | 39.35 |
| KRH02437 | Soybean | cytosol | 34.37 | 37.37 |
| KRH68153 | Soybean | cytosol | 33.44 | 34.62 |
Protein Annotations
| EMBL:ACUP02001985 | EnsemblPlants:KRH66589 | EnsemblPlantsGene:GLYMA_03G116300 | EntrezGene:100809118 | Gene3D:2.60.210.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like |
| PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:KRH66589 | ProteinID:KRH66589.1 |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000295686A | UniProt:K7KEH2 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr3:-:32461423..32464924
Molecular Weight (calculated)
36905.8 Da
IEP (calculated)
7.614
GRAVY (calculated)
-0.372
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLSDLEICK PTSSSHNKVG SISRSGRDLP PAHYLFKIES YSELMNTGVE KYETNVFQAG GYKWRLILYP SGNIKSNGNG YVSLYLAIAD TEKLSSGWEV
101: DVNFKLFVFN QKNNNYLTIQ DADGTVRKFQ EMKTEWGFEQ LISLETLLDS SNGYHVEDSC LFGAEVFVIS RSGKWESLSM VKEPPHGTFT WKIGKFSTLE
201: ETYYHSKSFT VGERDWNLRV YPRGIESERG KGLSVYLQLT DCERFPAKRT VYAKFKLGIL DQLNNKYHER TDSHWFRASG NIWGFKKLVA LSELYEAAKG
301: YIKDDTVIVE VQILVMSIAK IST
101: DVNFKLFVFN QKNNNYLTIQ DADGTVRKFQ EMKTEWGFEQ LISLETLLDS SNGYHVEDSC LFGAEVFVIS RSGKWESLSM VKEPPHGTFT WKIGKFSTLE
201: ETYYHSKSFT VGERDWNLRV YPRGIESERG KGLSVYLQLT DCERFPAKRT VYAKFKLGIL DQLNNKYHER TDSHWFRASG NIWGFKKLVA LSELYEAAKG
301: YIKDDTVIVE VQILVMSIAK IST
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.