Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0091g01140.t01 | Wine grape | cytosol | 85.06 | 84.55 |
| VIT_03s0091g01170.t01 | Wine grape | cytosol | 75.91 | 79.3 |
| VIT_03s0091g01120.t01 | Wine grape | cytosol | 39.33 | 76.33 |
| VIT_03s0091g01110.t01 | Wine grape | cytosol, plastid | 60.06 | 61.37 |
| KRH66589 | Soybean | cytosol | 47.56 | 48.3 |
Protein Annotations
| EntrezGene:100259955 | wikigene:100259955 | Gene3D:2.60.210.10 | MapMan:35.1 | ProteinID:CCB47696 | ProteinID:CCB47696.1 |
| UniProt:F6H696 | EMBL:FN595242 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | EntrezGene:LOC100259955 | wikigene:LOC100259955 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 |
| PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 | SUPFAM:SSF49599 | TIGR:TC59180 | InterPro:TRAF-like |
| UniParc:UPI000210924F | ArrayExpress:VIT_03s0091g01130 | EnsemblPlantsGene:VIT_03s0091g01130 | EnsemblPlants:VIT_03s0091g01130.t01 | unigene:Vvi.8961 | RefSeq:XP_002265318 |
| RefSeq:XP_002265318.1 | RefSeq:XP_003631686 | RefSeq:XP_003631686.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:-:7741682..7743818
Molecular Weight (calculated)
37573.0 Da
IEP (calculated)
6.057
GRAVY (calculated)
-0.303
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEKPPEKT LHPTSICNST TSISRTLRSI KPAHYLFRVE SVSVLLNTDI EKYESGSFKV GGYRWRLCLY PNGNKKSGGE DHISLYLEIS DAQKLPVGWE
101: VTVNFKLFVF NHIHEKYLTV QDADGKVRDF NVMKSRCGFA QFLSLDVLKD PCNGYLMDDS CIFGAEVFVI KYSGKGECLS MIKDPDDGTF TWVIENFSTL
201: NEEVLYSETF TIKEIKWKLS LYPKGNGKVK NKSLCLFLEL ADCETLHHQR KLYMEFELLI KDQCNDENVE PSHVKSNAKV WFCDSNKEWG FADMVSLSDL
301: NDKSKDFLLN DSLIVEAKIL LMMHSKNI
101: VTVNFKLFVF NHIHEKYLTV QDADGKVRDF NVMKSRCGFA QFLSLDVLKD PCNGYLMDDS CIFGAEVFVI KYSGKGECLS MIKDPDDGTF TWVIENFSTL
201: NEEVLYSETF TIKEIKWKLS LYPKGNGKVK NKSLCLFLEL ADCETLHHQR KLYMEFELLI KDQCNDENVE PSHVKSNAKV WFCDSNKEWG FADMVSLSDL
301: NDKSKDFLLN DSLIVEAKIL LMMHSKNI
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.