Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- nucleus 1
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0091g01120.t01 | Wine grape | cytosol | 33.96 | 64.5 |
| VIT_03s0091g01170.t01 | Wine grape | cytosol | 61.99 | 63.38 |
| VIT_03s0091g01130.t01 | Wine grape | cytosol | 61.37 | 60.06 |
| VIT_03s0091g01140.t01 | Wine grape | cytosol | 59.19 | 57.58 |
| KRH66589 | Soybean | cytosol | 46.73 | 46.44 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | ProteinID:CBI22432 | ProteinID:CBI22432.3 | UniProt:D7SXN2 | EMBL:FN595242 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI0001BE1E9D | ArrayExpress:VIT_03s0091g01110 | EnsemblPlantsGene:VIT_03s0091g01110 | EnsemblPlants:VIT_03s0091g01110.t01 | : |
Description
No Description!
Coordinates
chr3:-:7716202..7726782
Molecular Weight (calculated)
36808.4 Da
IEP (calculated)
8.177
GRAVY (calculated)
-0.135
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQSVLQIVI KEIITISRTL RYIQPSDYLF RVECVSSLMN TNIEKYESGK FEAGGYKWRL CLYPNGNIKS NGKGYISLYL AIADTKMLPL GWEVNVNFKL
101: FVFNHKHDQY LTVQDAGGKL TRFNVMKTQC GFPQFLSLDV LNDPCNGYLM EDSCIFGAEV FVIKYSGKGE CLSMIKEPVD GTFTWVIENF STLKEKVMYS
201: DVFTVEDFKW KLILYPKGSS KTKNKSLSLF LELADCETLD NQSKLYAEFE LLISDQGNLG YVKHHGTYYS FSFLYSPALT HDKVTVVWFK LKSYCPSTLP
301: VPKYSVEVKH QTKNFNHFAI G
101: FVFNHKHDQY LTVQDAGGKL TRFNVMKTQC GFPQFLSLDV LNDPCNGYLM EDSCIFGAEV FVIKYSGKGE CLSMIKEPVD GTFTWVIENF STLKEKVMYS
201: DVFTVEDFKW KLILYPKGSS KTKNKSLSLF LELADCETLD NQSKLYAEFE LLISDQGNLG YVKHHGTYYS FSFLYSPALT HDKVTVVWFK LKSYCPSTLP
301: VPKYSVEVKH QTKNFNHFAI G
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.