Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0091g01140.t01 | Wine grape | cytosol | 80.57 | 76.67 |
| VIT_03s0091g01130.t01 | Wine grape | cytosol | 79.3 | 75.91 |
| VIT_03s0091g01120.t01 | Wine grape | cytosol | 38.22 | 71.01 |
| VIT_03s0091g01110.t01 | Wine grape | cytosol, plastid | 63.38 | 61.99 |
| KRH66589 | Soybean | cytosol | 47.13 | 45.82 |
Protein Annotations
| EntrezGene:100258339 | wikigene:100258339 | Gene3D:2.60.210.10 | MapMan:35.1 | ProteinID:CCB47693 | ProteinID:CCB47693.1 |
| UniProt:F6H693 | EMBL:FN595242 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | EntrezGene:LOC100258339 | wikigene:LOC100258339 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 |
| PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000210924D |
| ArrayExpress:VIT_03s0091g01170 | EnsemblPlantsGene:VIT_03s0091g01170 | EnsemblPlants:VIT_03s0091g01170.t01 | unigene:Vvi.20638 | RefSeq:XP_002265732 | RefSeq:XP_002265732.1 |
| RefSeq:XP_019074446.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:7813667..7815342
Molecular Weight (calculated)
36137.5 Da
IEP (calculated)
7.084
GRAVY (calculated)
-0.244
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEKLQAIS RTLRSIQPAH YLFRVESMSV LLDTSIEKYE SGSFEVGGYK WRLCLYPNGN KKSDGDGHIS LYLVISDTQN LPLGWEVTVS FKLFVFNHIH
101: EEYLTVQDTD GKVRHFNVMK TQCGFAQFLP LDVLTDPCNG YLMDDSCIFG AEVFVIKYSG KGECLSMIKE PDDGTFTWMI ENFSRLKQEA IYSEIFTVKD
201: FKWKLVVYPK GNYKAKNKSL SLFLELANRG TLHHQRKLYT EFELLVKEQC NGGHVKPSHV KLNGQTWFCD SIKDWGFSNM ISLSDLKDKS NHFILNDTLI
301: VEAKIMLMMH SKNI
101: EEYLTVQDTD GKVRHFNVMK TQCGFAQFLP LDVLTDPCNG YLMDDSCIFG AEVFVIKYSG KGECLSMIKE PDDGTFTWMI ENFSRLKQEA IYSEIFTVKD
201: FKWKLVVYPK GNYKAKNKSL SLFLELANRG TLHHQRKLYT EFELLVKEQC NGGHVKPSHV KLNGQTWFCD SIKDWGFSNM ISLSDLKDKS NHFILNDTLI
301: VEAKIMLMMH SKNI
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.