CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50639	Soybean	cytosol, nucleus	90.24	86.45
Bra001660.1-P	Field mustard	cytosol	50.51	52.26
CDX82371	Canola	cytosol	52.53	50.49
CDX75913	Canola	cytosol	51.85	49.84
AT3G17380.1	Thale cress	cytosol	51.18	49.19
PGSC0003DMT400022188	Potato	cytosol	39.39	48.35
KRH68153	Soybean	cytosol	37.04	35.26
KRH66589	Soybean	cytosol	37.37	34.37
Solyc04g008530.1.1	Tomato	cytosol	27.61	33.06

Protein Annotations

EMBL:ACUP02010305	EnsemblPlants:KRH02437	EnsemblPlantsGene:GLYMA_17G038900	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	ProteinID:KRH02437	ProteinID:KRH02437.1	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI00023D6357	UniProt:I1MRW6	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr17:+:2885743..2888458

Molecular Weight (calculated)

34089.9 Da

IEP (calculated)

8.105

GRAVY (calculated)

-0.236

Length

297 amino acids

Sequence
(BLAST)

001: MIPPAHYVMK VQSFSLLAKN SIERYESGKF EAGGYKWKIV LYPNGNKSKD VREHISLYLA LDDTNSLHHG WDIYVNFRFF LHDQNNDNYL VVQDTVRKER
101: RFHKMKAEWG IDQFIPLRDL NLASKGYLVD DTCAFGAEVF VCKERSTGKG ECLVMMKEAI TYKYLYEFDN LKLDSECYNS KPFNAGNFKW KIKLYPKGKG
201: AELGNYLSLY LALADPLALS TCSKIYAQII LLILDQKQAN HHFGKANYWF SVSSQENGAA RFMPINNFTN QNLGYVVKDS CLVEAEVIIL GVVDALF

Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)

001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.