CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00780.1	KRH52586	AT1G22920.1	21798944
AT4G00780.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50639	Soybean	cytosol, nucleus	39.74	40.0
KRH02437	Soybean	cytosol	35.26	37.04
CDY70350	Canola	plastid	18.59	33.92
KRH66589	Soybean	cytosol	34.62	33.44
CDX99123	Canola	cytosol	19.87	32.29
CDY04288	Canola	cytosol	14.42	32.14
CDY70349	Canola	cytosol	26.92	31.82
Bra007873.1-P	Field mustard	cytosol	31.41	31.11
CDY44083	Canola	cytosol	31.41	31.11
Bra009894.1-P	Field mustard	cytosol	24.68	30.2
CDY07338	Canola	plastid	29.17	30.13
Bra031322.1-P	Field mustard	cytosol, plastid	29.49	29.68
CDY57407	Canola	cytosol	29.49	29.68
CDY05324	Canola	cytosol	28.21	29.33
CDY58708	Canola	cytosol, nucleus, plastid	28.85	29.22
Bra020540.1-P	Field mustard	cytosol	27.88	29.1
CDY05531	Canola	cytosol	27.88	29.1
AT1G69650.1	Thale cress	plastid	27.24	28.91
Bra003989.1-P	Field mustard	plastid	26.6	28.62
AT5G26290.1	Thale cress	extracellular	30.77	28.57
CDX87055	Canola	golgi, plasma membrane	30.45	28.53
AT1G69660.1	Thale cress	cytosol	20.83	28.14
AT3G22080.1	Thale cress	mitochondrion	28.21	28.03
AT3G46190.2	Thale cress	cytosol	27.88	27.97
CDY07340	Canola	plastid	28.53	27.9
CDX82246	Canola	endoplasmic reticulum, extracellular	33.65	27.85
AT3G22085.1	Thale cress	cytosol	25.96	27.84
Bra003837.1-P	Field mustard	cytosol	29.81	27.6
CDY04283	Canola	plastid	28.21	27.59
AT3G28220.1	Thale cress	cytosol	32.69	27.57
Bra000640.1-P	Field mustard	cytosol	28.21	27.5
CDX83143	Canola	cytosol	28.21	27.5
CDY19776	Canola	extracellular, plasma membrane, vacuole	30.45	27.46
CDY67361	Canola	vacuole	30.77	27.43
Bra001785.1-P	Field mustard	nucleus	24.68	27.3
AT1G65050.1	Thale cress	cytosol, mitochondrion	14.1	27.16
Bra036573.1-P	Field mustard	extracellular	30.45	27.14
CDY28571	Canola	cytosol	19.55	26.99
CDY28575	Canola	golgi	26.28	26.89
CDX87054	Canola	extracellular	30.13	26.86
CDX88229	Canola	extracellular	30.13	26.86
CDY19775	Canola	extracellular	30.13	26.86
CDY04290	Canola	extracellular	22.12	26.85
AT5G26260.1	Thale cress	extracellular	30.13	26.78
Bra004405.1-P	Field mustard	plastid	31.41	26.78
CDX95908	Canola	plastid	31.41	26.78
CDX74582	Canola	extracellular, golgi, plastid	32.05	26.74
Bra003990.1-P	Field mustard	plastid	25.64	26.67
CDX81648	Canola	plastid	24.36	26.57
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	29.81	26.57
CDX80557	Canola	extracellular	29.81	26.57
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	29.81	26.57
CDY70520	Canola	vacuole	28.21	26.51
CDY24977	Canola	extracellular	29.81	26.5
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	32.37	26.44
AT1G65370.1	Thale cress	cytosol	19.23	26.43
AT4G09770.4	Thale cress	cytosol	27.24	26.32
AT5G26280.3	Thale cress	plastid	31.09	26.29
Bra023852.1-P	Field mustard	cytosol	26.92	26.25
CDY39500	Canola	cytosol	26.92	26.25
CDX87056	Canola	extracellular	28.85	26.24
Bra020541.1-P	Field mustard	extracellular	29.49	26.21
CDY05532	Canola	extracellular	29.49	26.21
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	30.13	25.9
AT4G00780.1	Thale cress	cytosol	24.68	25.75
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	24.36	25.68
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	30.45	25.61
Bra036572.1-P	Field mustard	extracellular	28.21	25.58
CDY19777	Canola	extracellular	28.21	25.58
AT5G26300.1	Thale cress	extracellular	28.53	25.5
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	29.17	25.49
CDY07146	Canola	cytosol	24.04	25.42
AT5G26320.1	Thale cress	vacuole	28.53	25.28
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	32.05	25.25
AT2G15710.1	Thale cress	cytosol	29.49	25.21
CDY43080	Canola	endoplasmic reticulum, vacuole	30.77	25.2
Bra037411.1-P	Field mustard	mitochondrion	23.08	25.17
Bra034175.1-P	Field mustard	cytosol, plastid	26.92	25.15
Bra005554.1-P	Field mustard	cytosol	24.68	25.0
CDY50083	Canola	endoplasmic reticulum, vacuole	30.45	24.93
AT3G20370.1	Thale cress	extracellular, plasma membrane	30.13	24.8
CDX82252	Canola	plastid	28.53	24.79
CDY51713	Canola	cytosol	23.4	24.75
Bra040903.1-P	Field mustard	extracellular, vacuole	30.13	24.61
CDY43081	Canola	extracellular, vacuole	30.13	24.61
CDY50084	Canola	extracellular, vacuole	30.13	24.61
Bra022923.1-P	Field mustard	cytosol	24.04	24.51
CDX84705	Canola	cytosol	24.04	24.51
Bra040904.1-P	Field mustard	extracellular, vacuole	29.81	24.35
AT3G20380.1	Thale cress	extracellular, vacuole	29.17	24.27
CDY36041	Canola	plasma membrane	27.56	24.16
CDX81956	Canola	extracellular	23.72	24.1
CDY23783	Canola	cytosol	23.72	24.03
CDX79503	Canola	cytosol	23.4	23.93
CDY12160	Canola	cytosol	23.72	23.79
CDX74378	Canola	cytosol	21.79	23.69
AT2G32880.1	Thale cress	cytosol	24.04	23.58
CDX91854	Canola	cytosol	22.44	23.57
CDY44084	Canola	cytosol	31.41	23.22
Bra001786.1-P	Field mustard	extracellular, golgi	29.49	23.06
CDX82251	Canola	extracellular, golgi	29.49	23.06
CDX82249	Canola	plasma membrane, vacuole	28.21	22.98
CDX82248	Canola	endoplasmic reticulum, vacuole	32.37	22.95
CDY60616	Canola	cytosol, mitochondrion, plastid	21.15	22.92
AT2G04170.1	Thale cress	mitochondrion	30.77	22.86
AT4G01390.1	Thale cress	cytosol	21.79	22.67
CDX86065	Canola	cytosol	22.76	22.54
Bra035787.1-P	Field mustard	vacuole	28.85	22.28
CDY25415	Canola	vacuole	28.85	22.28
CDY29822	Canola	vacuole	28.53	22.08
CDY50282	Canola	endoplasmic reticulum, vacuole	27.24	22.08
Bra003836.1-P	Field mustard	extracellular, golgi	16.03	22.03
CDY34004	Canola	cytosol	21.15	22.0
CDY19307	Canola	cytosol	26.92	21.65
Bra037358.1-P	Field mustard	cytosol	19.87	21.53
AT2G04190.1	Thale cress	cytosol	28.21	21.41
CDY07196	Canola	cytosol	20.19	21.21
Bra039646.1-P	Field mustard	plastid	29.81	20.99
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	14.42	20.93
CDY48522	Canola	cytosol	18.59	20.79
CDY36040	Canola	extracellular	25.0	20.63
Bra007874.1-P	Field mustard	cytosol	26.28	20.5
CDY46265	Canola	plasma membrane	30.45	20.21
CDX91855	Canola	extracellular, plasma membrane, vacuole	12.82	20.2
CDY39666	Canola	endoplasmic reticulum, vacuole	21.15	20.0
CDY29329	Canola	plasma membrane	30.13	19.96
AT4G09780.1	Thale cress	endoplasmic reticulum, golgi	26.92	19.67
AT2G32870.1	Thale cress	cytosol	24.04	18.03
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.49	17.9
CDY37377	Canola	cytosol, plastid	25.96	16.53
Bra001787.1-P	Field mustard	endoplasmic reticulum	33.01	11.08
CDY36039	Canola	vacuole	28.21	9.55

Protein Annotations

EntrezGene:100781145	Gene3D:2.60.210.10	MapMan:35.1	EMBL:ACUP02002102	EnsemblPlantsGene:GLYMA_03G212000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1JQJ7	InterPro:IPR002083	InterPro:IPR008974	EnsemblPlants:KRH68153
ProteinID:KRH68153	ProteinID:KRH68153.1	InterPro:MATH/TRAF_dom	PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI00023C1ACF	:

Description

hypothetical protein

Coordinates

chr3:-:41810493..41813762

Molecular Weight (calculated)

34729.3 Da

IEP (calculated)

6.776

GRAVY (calculated)

-0.174

Length

312 amino acids

Sequence
(BLAST)

001: METKTADPLF SVQTLKGRKA PPSQYTFKIK SFSWLSKAPV QKCTSEEFEA GGYKWSLSIY PTGNTKGGGE GHVSIYLVLM DSSSLPVDWE VNAIVNFSAY
101: NFIDDEYVAT QDTNVRRFHV LKTEWGVAKF IDIDTFNDPS NGYLMDDTCV FGAEVFVVKT TTKGDCLSMI HGPIPLSHSW KFDNFSLAKL DKYESESFVG
201: GNYRWKLILY PNGIVEGKGN SISLFLTLEV STLPPNTKLV VECTLRAKKQ ISGHHAQTGF CRKFSSSNST WGTRQLVALA KLTDPNSGFL VNDTCILEAE
301: FTILGLMTPR ID

Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)

001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.