Factsheet for Bra036572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19777	Canola	extracellular	99.71	99.71
Bra009894.1-P	Field mustard	cytosol	52.62	70.98
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	71.22	70.0
Bra036573.1-P	Field mustard	extracellular	69.48	68.29
Bra020541.1-P	Field mustard	extracellular	68.6	67.24
Bra020540.1-P	Field mustard	cytosol	55.81	64.21
AT5G26320.1	Thale cress	vacuole	60.47	59.09
Bra001660.1-P	Field mustard	cytosol	24.42	29.27
Bra007873.1-P	Field mustard	cytosol	26.74	29.21
Bra000640.1-P	Field mustard	cytosol	26.45	28.44
KRH68153	Soybean	cytosol	25.58	28.21
Bra001785.1-P	Field mustard	nucleus	22.67	27.66
Bra040904.1-P	Field mustard	extracellular, vacuole	30.23	27.23
Bra040903.1-P	Field mustard	extracellular, vacuole	29.65	26.7
Bra023852.1-P	Field mustard	cytosol	24.42	26.25
Bra001786.1-P	Field mustard	extracellular, golgi	29.94	25.81
Bra031322.1-P	Field mustard	cytosol, plastid	22.67	25.16
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	25.87	24.93
Bra003989.1-P	Field mustard	plastid	20.93	24.83
Bra005554.1-P	Field mustard	cytosol	22.09	24.68
Bra004405.1-P	Field mustard	plastid	26.16	24.59
Bra035787.1-P	Field mustard	vacuole	28.78	24.5
Bra037411.1-P	Field mustard	mitochondrion	20.35	24.48
Bra003837.1-P	Field mustard	cytosol	23.84	24.33
Bra003990.1-P	Field mustard	plastid	20.93	24.0
Bra022923.1-P	Field mustard	cytosol	20.64	23.2
Bra037358.1-P	Field mustard	cytosol	19.19	22.92
Bra034175.1-P	Field mustard	cytosol, plastid	20.64	21.26
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	23.26	20.94
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	12.21	19.53
Bra003836.1-P	Field mustard	extracellular, golgi	12.79	19.38
Bra007874.1-P	Field mustard	cytosol	20.64	17.75
Bra039646.1-P	Field mustard	plastid	21.51	16.7
Bra001787.1-P	Field mustard	endoplasmic reticulum	29.94	11.08

Protein Annotations

EnsemblPlants:Bra036572.1	EnsemblPlants:Bra036572.1-P	EnsemblPlantsGene:Bra036572	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SignalP:SignalP-noTM	SMART:SM00061	SUPFAM:SSF49599
TMHMM:TMhelix	UniParc:UPI0002541CFE	UniProt:M4F663	MapMan:35.1	:	:

Description

AT5G26280 (E=7e-137) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:-:1815907..1817659

Molecular Weight (calculated)

39423.8 Da

IEP (calculated)

8.804

GRAVY (calculated)

-0.250

Length

344 amino acids

Sequence
(BLAST)

001: MENGRWSLRV ICFAFFFVIT SSSAEFLIQQ VTEYNSSYNL NANLGEVTRE LRSERPSSKI VTIGNFSVVM ERFEPYESSV FEASGYKWRL ILYVTGNKDD
101: GGNNHVSLYV RIEDTDSLPT GWEVMVDLKL FVFNARRHKY LTVTDEAVKR YNQGNREWGF GQLIPLLTFR NPNQGFIVQN TVSFGAEIFI IRPVGQQERV
201: SFVSNPPDNV FTWRILRFSS LEDKIYYSSE FLVGDRFWRL GFNPKGEGEG RPHAIPIFLY AQGFRPNAVE TSTWGAVNLR LRHQLGSNPK RASSAAWYPI
301: QPGHREGVSN IILRKDLQDG YLVKDSIVFE AEMVRVSVTN IVPV

Best Arabidopsis Sequence Match ( AT5G26280.3 )
(BLAST)

001: MSLCLYKCTL FPNKTISQNM NNQKWSIGFI SLAFLFITSS SAEFIIQQVT KGRGIEYNSS YSLEENLGVT RELREERPSS KIVTITSFSV IKGRGEPYES
101: SVFEAAGYKW RLVLYVNGNK NDGGNDHISL YARIEETNSL PLGWEVNVDL KLFVHNGKLH KYLTVTDGLV KRYNNAKKEW GFGQLIPRST FYNANEGYLD
201: QDTGSFGAEI FIVKPAQQQE KVTFISNPPN NVFTWKILRF STLEDKFYYS DDFLVEDRYW RLGFNPKGDG GGRPHALPIF LFAQGHKANA VATNTWGAVN
301: LRLKNQRSTN HRQIYSAAWY PIGSGYGVGV NNIILLADLN DASKGYLVND AIIFEAEMVK VSITNIVSA

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.