Factsheet for Bra001660.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82371	Canola	cytosol	99.3	92.23
AT3G17380.1	Thale cress	cytosol	88.85	82.52
KRH02437	Soybean	cytosol	52.26	50.51
KRH50639	Soybean	cytosol, nucleus	54.01	50.0
PGSC0003DMT400022188	Potato	cytosol	41.46	49.17
Solyc04g008530.1.1	Tomato	cytosol	29.97	34.68
Bra009894.1-P	Field mustard	cytosol	25.78	29.02
Bra001785.1-P	Field mustard	nucleus	27.18	27.66
Bra007873.1-P	Field mustard	cytosol	29.62	26.98
Bra031322.1-P	Field mustard	cytosol, plastid	28.92	26.77
Bra020540.1-P	Field mustard	cytosol	27.53	26.42
Bra000640.1-P	Field mustard	cytosol	29.27	26.25
Bra003989.1-P	Field mustard	plastid	26.48	26.21
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	31.36	25.71
Bra040904.1-P	Field mustard	extracellular, vacuole	33.8	25.39
Bra036573.1-P	Field mustard	extracellular	30.31	24.86
Bra037411.1-P	Field mustard	mitochondrion	24.74	24.83
Bra003837.1-P	Field mustard	cytosol	28.92	24.63
Bra040903.1-P	Field mustard	extracellular, vacuole	32.75	24.61
Bra036572.1-P	Field mustard	extracellular	29.27	24.42
Bra004405.1-P	Field mustard	plastid	31.01	24.32
Bra034175.1-P	Field mustard	cytosol, plastid	28.22	24.25
Bra001786.1-P	Field mustard	extracellular, golgi	33.45	24.06
Bra037358.1-P	Field mustard	cytosol	24.04	23.96
Bra003990.1-P	Field mustard	plastid	24.74	23.67
Bra020541.1-P	Field mustard	extracellular	28.92	23.65
Bra023852.1-P	Field mustard	cytosol	26.13	23.44
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	28.92	23.25
Bra022923.1-P	Field mustard	cytosol	23.69	22.22
Bra035787.1-P	Field mustard	vacuole	31.01	22.03
Bra005554.1-P	Field mustard	cytosol	22.3	20.78
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	27.53	20.68
Bra039646.1-P	Field mustard	plastid	30.31	19.64
Bra007874.1-P	Field mustard	cytosol	25.44	18.25
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	12.89	17.21
Bra003836.1-P	Field mustard	extracellular, golgi	13.59	17.18
Bra001787.1-P	Field mustard	endoplasmic reticulum	33.1	10.22

Protein Annotations

EnsemblPlants:Bra001660.1	EnsemblPlants:Bra001660.1-P	EnsemblPlantsGene:Bra001660	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002540401
UniProt:M4CBT0	MapMan:35.1	:	:	:	:

Description

AT3G17380 (E=4e-152) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA03:+:17732642..17733986

Molecular Weight (calculated)

32601.9 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.266

Length

287 amino acids

Sequence
(BLAST)

001: MVKIESFSLL TKHAIERYET ESFEAGGYKW KLVLYPNGNK SKNMKEHVSV YLALADSTSL GPGWEVSAVF RLYLLDQNKD SYLILQGKER RFHTFKREWG
101: FDKFIPTATF FNASNGYLME DTCMFGADVF VSKERRSGRG ECLSMIKDAT SSKHIWKIEN FSKLEKASYD SNAFFAGDRK WKIRLYPSGT NHGTGTHLSI
201: YLILADPETV SDGTKIFTEF TVRIYDQLQG RHIAGKVTKW FSGSSLENGW VKYVSMVYFT QPSSGLLLKD VCLVEADVCV HGITSAL

Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)

001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.