Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75913 | Canola | cytosol | 89.64 | 89.64 |
| CDX82371 | Canola | cytosol | 89.32 | 89.32 |
| Bra001660.1-P | Field mustard | cytosol | 82.52 | 88.85 |
| KRH50639 | Soybean | cytosol, nucleus | 54.05 | 53.87 |
| KRH02437 | Soybean | cytosol | 49.19 | 51.18 |
| PGSC0003DMT400022188 | Potato | cytosol | 37.22 | 47.52 |
| Solyc04g008530.1.1 | Tomato | cytosol | 29.45 | 36.69 |
| AT1G69650.1 | Thale cress | plastid | 27.18 | 28.57 |
| AT3G22080.1 | Thale cress | mitochondrion | 28.8 | 28.34 |
| AT1G69660.1 | Thale cress | cytosol | 21.04 | 28.14 |
| AT4G00780.1 | Thale cress | cytosol | 27.18 | 28.09 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 14.24 | 27.16 |
| AT5G26290.1 | Thale cress | extracellular | 29.45 | 27.08 |
| AT5G26260.1 | Thale cress | extracellular | 30.1 | 26.5 |
| AT3G22085.1 | Thale cress | cytosol | 24.92 | 26.46 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 32.36 | 26.39 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.24 | 26.35 |
| AT4G01390.1 | Thale cress | cytosol | 25.57 | 26.33 |
| AT5G26280.3 | Thale cress | plastid | 31.39 | 26.29 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 30.1 | 25.62 |
| AT1G65370.1 | Thale cress | cytosol | 18.77 | 25.55 |
| AT5G26300.1 | Thale cress | extracellular | 28.8 | 25.5 |
| AT4G09770.4 | Thale cress | cytosol | 25.89 | 24.77 |
| AT3G46190.2 | Thale cress | cytosol | 24.92 | 24.76 |
| AT3G28220.1 | Thale cress | cytosol | 29.13 | 24.32 |
| AT5G26320.1 | Thale cress | vacuole | 27.18 | 23.86 |
| AT2G32880.1 | Thale cress | cytosol | 23.95 | 23.27 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 27.83 | 22.93 |
| AT2G15710.1 | Thale cress | cytosol | 26.54 | 22.47 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 28.48 | 22.22 |
| AT2G04170.1 | Thale cress | mitochondrion | 30.1 | 22.14 |
| AT2G04190.1 | Thale cress | cytosol | 27.18 | 20.44 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 25.57 | 18.5 |
| AT2G32870.1 | Thale cress | cytosol | 22.33 | 16.59 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:821002 | ProteinID:AEE75947.1 | ArrayExpress:AT3G17380 | EnsemblPlantsGene:AT3G17380 |
| RefSeq:AT3G17380 | TAIR:AT3G17380 | RefSeq:AT3G17380-TAIR-G | EnsemblPlants:AT3G17380.1 | TAIR:AT3G17380.1 | Unigene:At.70071 |
| UniProt:F4J556 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | RefSeq:NP_566576.1 | PFAM:PF00917 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0000163420 | : | : |
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
Coordinates
chr3:+:5950190..5952235
Molecular Weight (calculated)
35128.5 Da
IEP (calculated)
7.009
GRAVY (calculated)
-0.360
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.