Factsheet for AT2G04190.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G04170.1	Thale cress	mitochondrion	67.15	65.71
AT5G26260.1	Thale cress	extracellular	52.8	61.82
AT5G26280.3	Thale cress	plastid	55.47	61.79
AT5G26300.1	Thale cress	extracellular	51.34	60.46
AT5G26290.1	Thale cress	extracellular	46.72	57.14
AT5G26320.1	Thale cress	vacuole	45.01	52.56
AT4G09770.4	Thale cress	cytosol	29.2	37.15
AT3G22085.1	Thale cress	cytosol	21.65	30.58
KRH68153	Soybean	cytosol	21.41	28.21
AT4G09780.1	Thale cress	endoplasmic reticulum, golgi	28.47	27.4
AT3G22080.1	Thale cress	mitochondrion	20.92	27.39
AT3G17380.1	Thale cress	cytosol	20.44	27.18
AT1G69650.1	Thale cress	plastid	18.73	26.19
AT1G65050.1	Thale cress	cytosol, mitochondrion	10.22	25.93
AT1G65370.1	Thale cress	cytosol	14.11	25.55
AT1G69660.1	Thale cress	cytosol	14.11	25.11
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	18.0	25.0
AT4G00780.1	Thale cress	cytosol	18.0	24.75
AT4G01390.1	Thale cress	cytosol	17.52	24.0
AT3G46190.2	Thale cress	cytosol	18.0	23.79
AT2G32880.1	Thale cress	cytosol	18.0	23.27
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	20.44	23.14
AT2G15710.1	Thale cress	cytosol	20.19	22.74
AT3G28220.1	Thale cress	cytosol	20.19	22.43
AT3G20370.1	Thale cress	extracellular, plasma membrane	19.95	21.64
AT3G20380.1	Thale cress	extracellular, vacuole	19.71	21.6
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	18.0	18.69
AT2G32870.1	Thale cress	cytosol	18.25	18.03

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.2	EntrezGene:814956	ProteinID:AEC05807.1	ArrayExpress:AT2G04190	EnsemblPlantsGene:AT2G04190
RefSeq:AT2G04190	TAIR:AT2G04190	RefSeq:AT2G04190-TAIR-G	EnsemblPlants:AT2G04190.1	TAIR:AT2G04190.1	UniProt:F4IV59
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	RefSeq:NP_178503.2
PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR26379	PANTHER:PTHR26379:SF214	SMART:SM00061	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI000034EE2D	SEG:seg	:	:	:

Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IV59]

Coordinates

chr2:-:1427321..1430406

Molecular Weight (calculated)

44421.0 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.413

Length

411 amino acids

Sequence
(BLAST)

001: MEIVGHRGGW GDFPGKGVGS CVFGGGGGGP AFGGRGGGPG RGYGGGPRVH GPGYGIGSRG PDPGPGFFFG GAGPGPGYGG GGGHGPGYGG GGDGRGYGSE
101: TGGGNHGPEV TRTLRDEPPS HRILTITNFS EIIGREEPYE SSVFEAYFEH KWRLILYVNG NQNDGGSNHI SLYLRSEETD HLTYDGSINF VLKLFVYNGK
201: QDKYLTVTDG IQKRYNYKNK EWGYGKLIPL STFLDTSQGY LEQDTASFGA EIFLCPPIQV QEKVTFISNP PNNVFTWKIL HFSTLEDIVY YSDDFLVEDR
301: YWRLGVNPKG TGDGRSQAIK IFLYAQGHKP NAVVSSTWGA VNLRVKNQRS SNHSQIYSAA LYPIRNDYGV GVNTVLSLAE LNDAVKEYLV NDSIIFEAEM
401: VKVSVTNIVP I

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.