Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G01390.1 | Thale cress | cytosol | 78.26 | 78.0 |
| CDY07146 | Canola | cytosol | 69.23 | 70.17 |
| CDY51713 | Canola | cytosol | 68.9 | 69.83 |
| Bra037411.1-P | Field mustard | mitochondrion | 65.89 | 68.88 |
| AT2G32880.1 | Thale cress | cytosol | 33.44 | 31.45 |
| AT3G17380.1 | Thale cress | cytosol | 28.09 | 27.18 |
| AT4G09770.4 | Thale cress | cytosol | 26.76 | 24.77 |
| KRH68153 | Soybean | cytosol | 25.75 | 24.68 |
| AT3G22085.1 | Thale cress | cytosol | 23.75 | 24.4 |
| AT2G32870.1 | Thale cress | cytosol | 33.44 | 24.04 |
| AT1G69650.1 | Thale cress | plastid | 23.08 | 23.47 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 28.09 | 23.14 |
| AT5G26290.1 | Thale cress | extracellular | 25.75 | 22.92 |
| AT1G69660.1 | Thale cress | cytosol | 17.06 | 22.08 |
| AT3G22080.1 | Thale cress | mitochondrion | 22.74 | 21.66 |
| AT3G28220.1 | Thale cress | cytosol | 26.76 | 21.62 |
| AT5G26320.1 | Thale cress | vacuole | 25.08 | 21.31 |
| AT5G26280.3 | Thale cress | plastid | 25.75 | 20.87 |
| AT3G46190.2 | Thale cress | cytosol | 21.4 | 20.58 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 11.04 | 20.37 |
| AT5G26300.1 | Thale cress | extracellular | 23.75 | 20.34 |
| AT5G26260.1 | Thale cress | extracellular | 23.41 | 19.94 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 19.73 | 19.93 |
| AT1G65370.1 | Thale cress | cytosol | 15.05 | 19.82 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 26.76 | 18.74 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 23.41 | 18.67 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 24.41 | 18.43 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 23.08 | 18.21 |
| AT2G04190.1 | Thale cress | cytosol | 24.75 | 18.0 |
| AT2G04170.1 | Thale cress | mitochondrion | 24.41 | 17.38 |
| AT2G15710.1 | Thale cress | cytosol | 21.07 | 17.26 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:828009 | UniProt:A0A178UXI0 | ProteinID:AEE81935.1 | ArrayExpress:AT4G00780 |
| EnsemblPlantsGene:AT4G00780 | RefSeq:AT4G00780 | TAIR:AT4G00780 | RefSeq:AT4G00780-TAIR-G | EnsemblPlants:AT4G00780.1 | TAIR:AT4G00780.1 |
| EMBL:AY065285 | EMBL:AY091337 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_567187.1 | ProteinID:OAO98240.1 | PFAM:PF00917 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | UniProt:Q8VZ38 | SMART:SM00061 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000A38DD | : | : | : |
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
Coordinates
chr4:+:334573..336478
Molecular Weight (calculated)
34325.1 Da
IEP (calculated)
7.423
GRAVY (calculated)
-0.352
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.