Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 65.2 | 50.0 |
| AT1G69660.1 | Thale cress | cytosol | 45.81 | 45.02 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 24.67 | 34.57 |
| AT3G22080.1 | Thale cress | mitochondrion | 45.37 | 32.8 |
| AT1G69650.1 | Thale cress | plastid | 42.29 | 32.65 |
| AT3G22085.1 | Thale cress | cytosol | 40.09 | 31.27 |
| Bra023852.1-P | Field mustard | cytosol | 44.05 | 31.25 |
| CDY39500 | Canola | cytosol | 43.61 | 30.94 |
| AT2G15710.1 | Thale cress | cytosol | 44.49 | 27.67 |
| CDY19307 | Canola | cytosol | 43.17 | 25.26 |
| AT3G46190.2 | Thale cress | cytosol | 28.19 | 20.58 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 33.48 | 20.05 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 33.04 | 20.0 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 31.72 | 19.83 |
| KRH68153 | Soybean | cytosol | 26.43 | 19.23 |
| AT3G17380.1 | Thale cress | cytosol | 25.55 | 18.77 |
| AT3G28220.1 | Thale cress | cytosol | 30.4 | 18.65 |
| AT5G26320.1 | Thale cress | vacuole | 26.43 | 17.05 |
| AT5G26260.1 | Thale cress | extracellular | 25.99 | 16.81 |
| AT5G26290.1 | Thale cress | extracellular | 24.67 | 16.67 |
| AT5G26300.1 | Thale cress | extracellular | 25.11 | 16.33 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 28.19 | 16.16 |
| AT4G09770.4 | Thale cress | cytosol | 22.47 | 15.79 |
| AT5G26280.3 | Thale cress | plastid | 25.11 | 15.45 |
| AT4G00780.1 | Thale cress | cytosol | 19.82 | 15.05 |
| AT2G04190.1 | Thale cress | cytosol | 25.55 | 14.11 |
| AT2G04170.1 | Thale cress | mitochondrion | 25.99 | 14.05 |
| AT2G32880.1 | Thale cress | cytosol | 18.5 | 13.21 |
| AT4G01390.1 | Thale cress | cytosol | 17.18 | 13.0 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 22.91 | 12.18 |
| AT2G32870.1 | Thale cress | cytosol | 19.38 | 10.58 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:842848 | ProteinID:AEE34366.1 | ArrayExpress:AT1G65370 | EnsemblPlantsGene:AT1G65370 |
| RefSeq:AT1G65370 | TAIR:AT1G65370 | RefSeq:AT1G65370-TAIR-G | EnsemblPlants:AT1G65370.1 | TAIR:AT1G65370.1 | EMBL:AY054271 |
| EMBL:AY132005 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0006468 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016301 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_564849.1 |
| PFAM:PF00917 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | UniProt:Q940M1 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000A04DA | : | : | : |
Description
At1g65370/T8F5_15 [Source:UniProtKB/TrEMBL;Acc:Q940M1]
Coordinates
chr1:-:24284469..24286347
Molecular Weight (calculated)
25638.6 Da
IEP (calculated)
5.142
GRAVY (calculated)
-0.241
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVECLSSTT PPIDVFDYLS FFVFNKKDNK YLSIQDVEVK RFSSSKTVWG LPKAMSLETF TDPAKGFIVE GEPCEFGAHV KIASSPVPVD ENLPFHKFSW
101: SIRDFSVLKQ NDCISKTFAM GGKNWTLTVY PKGDSEADNE FCKYLHLADG EVLSPGEMIS VRAQLRALDP RGSKHKTVWL QQWIMAATKA RGIPQSLSLA
201: DLQEAYLDED TLNVEIECEV VNSRKMF
101: SIRDFSVLKQ NDCISKTFAM GGKNWTLTVY PKGDSEADNE FCKYLHLADG EVLSPGEMIS VRAQLRALDP RGSKHKTVWL QQWIMAATKA RGIPQSLSLA
201: DLQEAYLDED TLNVEIECEV VNSRKMF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.