Factsheet for Bra023852.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39500	Canola	cytosol	99.69	99.69
Bra007873.1-P	Field mustard	cytosol	53.12	53.97
Bra031322.1-P	Field mustard	cytosol, plastid	47.5	49.03
Bra003989.1-P	Field mustard	plastid	41.88	46.21
Bra004405.1-P	Field mustard	plastid	50.94	44.54
AT1G65370.1	Thale cress	cytosol	31.25	44.05
Bra003990.1-P	Field mustard	plastid	40.0	42.67
AT2G15710.1	Thale cress	cytosol	47.19	41.37
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	37.19	40.2
Bra034175.1-P	Field mustard	cytosol, plastid	41.88	40.12
AT1G65050.1	Thale cress	cytosol, mitochondrion	19.06	37.65
Bra001785.1-P	Field mustard	nucleus	32.19	36.52
Bra000640.1-P	Field mustard	cytosol	35.31	35.31
Bra040904.1-P	Field mustard	extracellular, vacuole	39.38	32.98
Bra007874.1-P	Field mustard	cytosol	40.31	32.25
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	33.12	29.69
Bra040903.1-P	Field mustard	extracellular, vacuole	35.0	29.32
Bra001786.1-P	Field mustard	extracellular, golgi	36.25	29.07
Bra009894.1-P	Field mustard	cytosol	22.81	28.63
Bra035787.1-P	Field mustard	vacuole	35.62	28.22
KRH68153	Soybean	cytosol	26.25	26.92
Bra001660.1-P	Field mustard	cytosol	23.44	26.13
Bra003837.1-P	Field mustard	cytosol	27.5	26.11
Bra020540.1-P	Field mustard	cytosol	23.75	25.42
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	30.0	25.13
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	26.88	24.57
Bra036572.1-P	Field mustard	extracellular	26.25	24.42
Bra036573.1-P	Field mustard	extracellular	25.62	23.43
Bra020541.1-P	Field mustard	extracellular	25.31	23.08
Bra039646.1-P	Field mustard	plastid	31.25	22.57
Bra037411.1-P	Field mustard	mitochondrion	18.44	20.63
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	13.44	20.0
Bra003836.1-P	Field mustard	extracellular, golgi	13.12	18.5
Bra037358.1-P	Field mustard	cytosol	16.25	18.06
Bra022923.1-P	Field mustard	cytosol	15.94	16.67
Bra005554.1-P	Field mustard	cytosol	15.31	15.91
Bra001787.1-P	Field mustard	endoplasmic reticulum	36.88	12.69

Protein Annotations

EnsemblPlants:Bra023852.1	EnsemblPlants:Bra023852.1-P	EnsemblPlantsGene:Bra023852	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SUPFAM:SSF49599	UniParc:UPI0002544368	UniProt:M4E4Z8
MapMan:35.2	:	:	:	:	:

Description

AT3G22080 (E=7e-083) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA01:+:20430715..20432223

Molecular Weight (calculated)

37219.8 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.279

Length

320 amino acids

Sequence
(BLAST)

001: MVVTVSDEET SSLCFFASES TTSQTFWTER PPGSYSLKIQ NLAQLIGEKY HTRGFLVNGY NWRLIIYPKG NEKDNGSGYI SMYVEIDSTS EVFAYLTFFV
101: YNKKVNKYLC IHDTQVKRFN ALKKVWGSSQ MLPLELFNDP KNGYIFEEDQ CEFGVDVTID STVTNWEIVS FNENFCYPKF FFSVKNFTML NEHLYFMSNT
201: FSVGGKTWVL RFIRKCFSTL DDKWISIFLH LADNERLLPD ERIYTRGHFR VLDPYGSNHI TEKFNCWHDQ SNSGCGHDKV VSMDKLQEVY LDEEDTLSVA
301: IEFEVISATN YSPINYSAII

Best Arabidopsis Sequence Match ( AT3G22080.1 )
(BLAST)

001: MMCSSVSSTT LRSWRERTPN SYSLKLQNIS QVEKSTLFSD GKYQSRLFSS GGYNWRMIIY PKGNRKDDGS GFISMYVEID STSLLTTPTT EVFADLRFFV
101: FNKKENKYYT IQHVESKLFN AFRTIWGLAQ VLPVDTFTDP KNGYIFEGDQ CEFGVDVIVA APPTNWEIHT LHEALSQPKF FWTVKNFSEL NNNVYTSGNF
201: SMRERKWVLK LYPKGDVKGD RKWLSLYLYL DQSETLKESE KIFVQAQLRV LDPRGSNHVT HKISSWYTSS NTAWGYRKFV SLAEIPKAYL DKDTLKVQID
301: VEVVSEAEFS PSMI

Arabidopsis Description

Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:F4IYY5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.