Factsheet for Bra003989.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
plasma membrane 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07338	Canola	plastid	80.0	76.82
Bra007873.1-P	Field mustard	cytosol	64.83	59.68
Bra003990.1-P	Field mustard	plastid	60.69	58.67
Bra004405.1-P	Field mustard	plastid	66.55	52.73
Bra031322.1-P	Field mustard	cytosol, plastid	49.66	46.45
Bra023852.1-P	Field mustard	cytosol	46.21	41.88
Bra034175.1-P	Field mustard	cytosol, plastid	44.14	38.32
Bra007874.1-P	Field mustard	cytosol	49.31	35.75
Bra001785.1-P	Field mustard	nucleus	32.41	33.33
Bra000640.1-P	Field mustard	cytosol	36.55	33.12
Bra040903.1-P	Field mustard	extracellular, vacuole	40.34	30.63
Bra040904.1-P	Field mustard	extracellular, vacuole	39.66	30.1
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	35.17	28.57
Bra003837.1-P	Field mustard	cytosol	33.1	28.49
Bra035787.1-P	Field mustard	vacuole	37.93	27.23
Bra001786.1-P	Field mustard	extracellular, golgi	36.9	26.82
KRH68153	Soybean	cytosol	28.62	26.6
Bra001660.1-P	Field mustard	cytosol	26.21	26.48
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	34.48	26.18
Bra009894.1-P	Field mustard	cytosol	22.76	25.88
Bra020540.1-P	Field mustard	cytosol	25.17	24.41
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	26.9	22.29
Bra036573.1-P	Field mustard	extracellular	26.9	22.29
Bra020541.1-P	Field mustard	extracellular	26.21	21.65
Bra039646.1-P	Field mustard	plastid	32.07	20.99
Bra036572.1-P	Field mustard	extracellular	24.83	20.93
Bra022923.1-P	Field mustard	cytosol	21.38	20.26
Bra037358.1-P	Field mustard	cytosol	18.62	18.75
Bra037411.1-P	Field mustard	mitochondrion	18.28	18.53
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	13.45	18.14
Bra005554.1-P	Field mustard	cytosol	18.97	17.86
Bra003836.1-P	Field mustard	extracellular, golgi	13.45	17.18
Bra001787.1-P	Field mustard	endoplasmic reticulum	41.38	12.9

Protein Annotations

EnsemblPlants:Bra003989.1	EnsemblPlants:Bra003989.1-P	EnsemblPlantsGene:Bra003989	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0002541971	UniProt:M4CIF5	MapMan:35.2	:	:	:

Description

AT1G69660 (E=6e-086) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA07:+:16145472..16147462

Molecular Weight (calculated)

33513.6 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.423

Length

290 amino acids

Sequence
(BLAST)

001: MGSSSTEVST IVKNWREHPP ASYSLKIHSF SQFENSSSSS DDKYQSRLFS SGRYKCKSLM VFTPPTEVFA EIRFFIYNKK ENKYFTIQDV EVKRFNALKT
101: VWGLQQILPC DTFSNPENGY IFEGGQCEFG VDVIVSLPLT NWEVLSYTEK FSNSKFSWAI KNFSELKENV LTSKSFSMAG KKWFLKLYPK GDSRADGKFL
201: SIFLCLDDCD KPKDDEKISV QANFRVLDKR GSNHFQCQFN FWYNEQQLGG GWFEFLSLPE LPKVYLDKED ALKVEIEFKA VSATKYSPII

Best Arabidopsis Sequence Match ( AT1G69660.1 )
(BLAST)

001: MESTPPTEAF AELRFYVYNK KENKYFTIQD VEVKRFNALR MVWGLLKVLS YDTFTNPENG FIFEGGECEF GVDVLVAPPL TNWEILSFDE KLSPPKFSWN
101: LKNFSELKED VYTSNKYPMG GKEWVLKLYP KGNSRADGKY LSLYVHLADS ETLKSDEKNF KQGHVRVLNP LGSNHVEVQS SCWYKESSRG WGWDHFLSIA
201: NLRKTYLDKE DALNVEIEFK VVSATKYSPI I

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.