Factsheet for Bra003990.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1
peroxisome 1
extracellular 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07340	Canola	plastid	99.0	93.1
Bra003989.1-P	Field mustard	plastid	58.67	60.69
Bra007873.1-P	Field mustard	cytosol	60.33	57.46
Bra004405.1-P	Field mustard	plastid	61.0	50.0
Bra031322.1-P	Field mustard	cytosol, plastid	47.33	45.81
Bra023852.1-P	Field mustard	cytosol	42.67	40.0
Bra034175.1-P	Field mustard	cytosol, plastid	42.0	37.72
Bra007874.1-P	Field mustard	cytosol	47.0	35.25
Bra001785.1-P	Field mustard	nucleus	32.33	34.4
Bra000640.1-P	Field mustard	cytosol	33.67	31.56
Bra040903.1-P	Field mustard	extracellular, vacuole	37.67	29.58
Bra040904.1-P	Field mustard	extracellular, vacuole	37.33	29.32
Bra001786.1-P	Field mustard	extracellular, golgi	36.33	27.32
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	32.33	27.17
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	34.0	26.7
Bra003837.1-P	Field mustard	cytosol	29.67	26.41
Bra035787.1-P	Field mustard	vacuole	35.33	26.24
KRH68153	Soybean	cytosol	26.67	25.64
Bra001660.1-P	Field mustard	cytosol	23.67	24.74
Bra039646.1-P	Field mustard	plastid	33.67	22.8
Bra009894.1-P	Field mustard	cytosol	19.0	22.35
Bra020540.1-P	Field mustard	cytosol	21.67	21.74
Bra020541.1-P	Field mustard	extracellular	25.0	21.37
Bra036573.1-P	Field mustard	extracellular	24.67	21.14
Bra036572.1-P	Field mustard	extracellular	24.0	20.93
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	15.0	20.93
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	24.33	20.86
Bra022923.1-P	Field mustard	cytosol	21.0	20.59
Bra037358.1-P	Field mustard	cytosol	19.67	20.49
Bra037411.1-P	Field mustard	mitochondrion	19.0	19.93
Bra003836.1-P	Field mustard	extracellular, golgi	15.0	19.82
Bra005554.1-P	Field mustard	cytosol	20.33	19.81
Bra001787.1-P	Field mustard	endoplasmic reticulum	39.0	12.58

Protein Annotations

EnsemblPlants:Bra003990.1	EnsemblPlants:Bra003990.1-P	EnsemblPlantsGene:Bra003990	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002541972
UniProt:M4CIF6	MapMan:35.2	:	:	:	:

Description

AT3G22080 (E=1e-074) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA07:+:16149000..16150406

Molecular Weight (calculated)

34572.8 Da

IEP (calculated)

5.002

GRAVY (calculated)

-0.383

Length

300 amino acids

Sequence
(BLAST)

001: MGSNSSTAAS TEVSTIVKHW REHPPSSYSL KIHNFSELEK STALSDHKYQ SRLFTYGGYN LRLIIYPKGN GEDNVRGFIS MYVEIDSKSL MLFTSPTEIF
101: AELRFFVYNK KENKYFTIQS QCEFGVDVIV APSLTNWEVL SFTKKYFDPK FSWTIKDFSE LKEDVQKSNS FPMGGKEWVL ALYPKGALEA HGKWLSIFLC
201: LADSDKPEAD EKIFVQARLG VLNPLGSYHF EYPLETWYTE QSPGWGWAQF LPLAELPKVY LDKEDALKVE IEFKVVSETK YSFTEADPLE KDWVQLTPEN

Best Arabidopsis Sequence Match ( AT1G69650.1 )
(BLAST)

001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.