Factsheet for Bra039646.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29329	Canola	plasma membrane	98.19	92.36
CDY46265	Canola	plasma membrane	97.52	91.91
Bra001785.1-P	Field mustard	nucleus	25.06	39.36
Bra000640.1-P	Field mustard	cytosol	27.99	38.75
Bra003837.1-P	Field mustard	cytosol	27.77	36.5
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	30.25	35.08
Bra007873.1-P	Field mustard	cytosol	24.83	34.92
Bra003990.1-P	Field mustard	plastid	22.8	33.67
Bra004405.1-P	Field mustard	plastid	26.86	32.51
Bra040904.1-P	Field mustard	extracellular, vacuole	27.99	32.46
Bra040903.1-P	Field mustard	extracellular, vacuole	27.77	32.2
Bra003989.1-P	Field mustard	plastid	20.99	32.07
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	25.73	31.93
Bra031322.1-P	Field mustard	cytosol, plastid	21.9	31.29
Bra023852.1-P	Field mustard	cytosol	22.57	31.25
Bra001786.1-P	Field mustard	extracellular, golgi	27.99	31.08
Bra035787.1-P	Field mustard	vacuole	27.77	30.45
Bra001660.1-P	Field mustard	cytosol	19.64	30.31
KRH68153	Soybean	cytosol	20.99	29.81
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	13.77	28.37
Bra003836.1-P	Field mustard	extracellular, golgi	14.45	28.19
Bra034175.1-P	Field mustard	cytosol, plastid	20.77	27.54
Bra009894.1-P	Field mustard	cytosol	14.67	25.49
Bra022923.1-P	Field mustard	cytosol	17.16	24.84
Bra037411.1-P	Field mustard	mitochondrion	15.35	23.78
Bra005554.1-P	Field mustard	cytosol	16.48	23.7
Bra020540.1-P	Field mustard	cytosol	15.8	23.41
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	17.61	22.29
Bra036573.1-P	Field mustard	extracellular	17.61	22.29
Bra007874.1-P	Field mustard	cytosol	20.09	22.25
Bra037358.1-P	Field mustard	cytosol	14.22	21.88
Bra036572.1-P	Field mustard	extracellular	16.7	21.51
Bra020541.1-P	Field mustard	extracellular	16.93	21.37
Bra001787.1-P	Field mustard	endoplasmic reticulum	33.63	16.02

Protein Annotations

EnsemblPlants:Bra039646.1	EnsemblPlants:Bra039646.1-P	EnsemblPlantsGene:Bra039646	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI000253EA4A
UniProt:M4FEX4	MapMan:35.2	:	:	:	:

Description

AT3G28220 (E=2e-070) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrScaffold000172:-:159899..162834

Molecular Weight (calculated)

50309.1 Da

IEP (calculated)

5.575

GRAVY (calculated)

-0.437

Length

443 amino acids

Sequence
(BLAST)

001: MQVSLVPTKG TNNAVPCNPQ SSRLAAINGA EPRLSAEQKF MRTRPPSAYC VRIESCSELM TTSPNLQYET RPFSVGGFNW TFILQPFGNK TSVGDWISAY
101: VAIDPSGLVG ENREIYADLR FLVYSKSKDQ YWTSMDTEIR HFHQFRTTWG SPNFIQTKQF KAKDKEYIFD DDQCVFGVDI SVYPYFNQWE ILSIDKTVYG
201: PNSWKLMKFS TLTRDFYISD DFSVGGKKWA LKVYPNGNGT GEGNSLSLYV ILSENQILKT YEKVYVRAKL RVLDQKQSKH LQKPILSWFD TPGEGSGFEQ
301: FVSFTDLQNP AKGFIVDDSL TVQVQFEATS STNYYSANAA QLMSNFFSIG LSDTTDALTF TFGDSQVQEN LNFEDISDDV YAQQLSAECV VKRRVEKLVS
401: RKLSRTEASS SSVEINTDQS NSMVMMTSKI LTFTTEREQK QQK

Best Arabidopsis Sequence Match ( AT1G58270.1 )
(BLAST)

001: MYSEEKKSRN YGSIFVYCFF CFVLIVEVAR FAKPYINLQN LIETEAVVEE GFMAVGNSGN LPCGSSKPSS ASVRAHDEQK LSQAVTTDTR TRPPNSYCVK
101: FQSFVTMAKQ VKENGGKYES RPFSVGGYNW TLLIYPVIYI PTDSGGYVSI YVRVDNSSLI TNPKDVYAEI TFLAYKSSTD KYQISQETEA QRFHLFKQQW
201: GLLQFLPIYY FENPAYGYFF EGESVVFGVD INIVKPFENW EVFSNEQNIR DPIFEWRLTK FSTRFLDSYT SDSFSSGGRN WALKVYPNGV GNATGNSLSL
301: YLLSDQSNDK GYVEAKLRVI DQIQSNNFEK KVAAWPNATE NGWGFDRFLS FADIKNTSKG FLVNDTLKLE VQILSFSKTD YYSHQSSLNV LTGDST

Arabidopsis Description

ZW9At1g58270/F19C14_8 [Source:UniProtKB/TrEMBL;Acc:Q9SLV3]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.