Factsheet for Bra005554.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12160	Canola	cytosol	94.81	93.89
CDY60616	Canola	cytosol, mitochondrion, plastid	83.77	89.58
AT2G32880.1	Thale cress	cytosol	58.12	56.29
Bra022923.1-P	Field mustard	cytosol	54.87	55.23
AT2G32870.1	Thale cress	cytosol	58.12	43.03
Bra037358.1-P	Field mustard	cytosol	31.17	33.33
Bra037411.1-P	Field mustard	mitochondrion	27.92	30.07
Bra009894.1-P	Field mustard	cytosol	22.4	27.06
Bra020540.1-P	Field mustard	cytosol	24.35	25.08
KRH68153	Soybean	cytosol	25.0	24.68
Bra001660.1-P	Field mustard	cytosol	20.78	22.3
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	25.32	22.29
Bra036573.1-P	Field mustard	extracellular	25.32	22.29
Bra007873.1-P	Field mustard	cytosol	22.73	22.22
Bra020541.1-P	Field mustard	extracellular	25.32	22.22
Bra036572.1-P	Field mustard	extracellular	24.68	22.09
Bra001785.1-P	Field mustard	nucleus	19.48	21.28
Bra003837.1-P	Field mustard	cytosol	22.73	20.77
Bra003990.1-P	Field mustard	plastid	19.81	20.33
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	25.0	20.16
Bra000640.1-P	Field mustard	cytosol	20.45	19.69
Bra003989.1-P	Field mustard	plastid	17.86	18.97
Bra040903.1-P	Field mustard	extracellular, vacuole	23.05	18.59
Bra004405.1-P	Field mustard	plastid	20.45	17.21
Bra035787.1-P	Field mustard	vacuole	22.4	17.08
Bra001786.1-P	Field mustard	extracellular, golgi	21.75	16.79
Bra031322.1-P	Field mustard	cytosol, plastid	16.88	16.77
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	19.16	16.53
Bra039646.1-P	Field mustard	plastid	23.7	16.48
Bra040904.1-P	Field mustard	extracellular, vacuole	19.81	15.97
Bra034175.1-P	Field mustard	cytosol, plastid	17.21	15.87
Bra023852.1-P	Field mustard	cytosol	15.91	15.31
Bra007874.1-P	Field mustard	cytosol	17.53	13.5
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	9.09	13.02
Bra003836.1-P	Field mustard	extracellular, golgi	9.09	12.33
Bra001787.1-P	Field mustard	endoplasmic reticulum	23.05	7.63

Protein Annotations

EnsemblPlants:Bra005554.1	EnsemblPlants:Bra005554.1-P	EnsemblPlantsGene:Bra005554	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI00025475C2	UniProt:M4CMW6	MapMan:35.2	:	:	:

Description

AT2G32870 (E=1e-078) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA05:-:6186912..6188476

Molecular Weight (calculated)

35110.0 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.155

Length

308 amino acids

Sequence
(BLAST)

001: MGLTSLEDNI KYKKRNNSHF MLVDGMSTLL TESAKNCESM DFHAFGLKWK FNIRLDLVKD YLSAYLTIAD EKCTGSNWGV TCCFNLSVIS QIGEFDICTA
101: SVFSFDSNHV SWGVSSLISQ DMLKQKFIVN DKAVFCAEIT GVVPLFLNVI INTFSPTMGT AERVKLMKVP RNNSRFTWKI TQFSSFSGES HSSYEFTCGP
201: RRWYLEMYPK GYLEGKGNSL SLFLHASDFV SKAPVEATSA IYKLRVLDQH KRNHHEINTA HRFTSNTRWG FNKFLELEEL HKASNGFLVN DAIYIGVEFL
301: SMATREYL

Best Arabidopsis Sequence Match ( AT2G32870.1 )
(BLAST)

001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.