Factsheet for Bra001787.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82248	Canola	endoplasmic reticulum, vacuole	46.13	97.5
AT3G20370.1	Thale cress	extracellular, plasma membrane	30.43	74.67
Bra040904.1-P	Field mustard	extracellular, vacuole	30.65	74.61
Bra040903.1-P	Field mustard	extracellular, vacuole	28.71	69.9
Bra000640.1-P	Field mustard	cytosol	22.26	64.69
Bra035787.1-P	Field mustard	vacuole	27.74	63.86
Bra001786.1-P	Field mustard	extracellular, golgi	26.77	62.41
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	23.55	61.34
Bra001785.1-P	Field mustard	nucleus	18.39	60.64
AT3G20380.1	Thale cress	extracellular, vacuole	23.98	59.47
Bra007873.1-P	Field mustard	cytosol	15.05	44.44
Bra003989.1-P	Field mustard	plastid	12.9	41.38
Bra004405.1-P	Field mustard	plastid	16.02	40.71
Bra031322.1-P	Field mustard	cytosol, plastid	13.55	40.65
Bra003990.1-P	Field mustard	plastid	12.58	39.0
Bra003837.1-P	Field mustard	cytosol	13.44	37.09
Bra023852.1-P	Field mustard	cytosol	12.69	36.88
Bra034175.1-P	Field mustard	cytosol, plastid	12.58	35.03
Bra009894.1-P	Field mustard	cytosol	9.57	34.9
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	14.3	34.82
Bra003836.1-P	Field mustard	extracellular, golgi	8.28	33.92
Bra039646.1-P	Field mustard	plastid	16.02	33.63
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	12.47	33.14
Bra001660.1-P	Field mustard	cytosol	10.22	33.1
KRH68153	Soybean	cytosol	11.08	33.01
Bra036573.1-P	Field mustard	extracellular	12.26	32.57
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	7.53	32.56
Bra020541.1-P	Field mustard	extracellular	12.26	32.48
Bra020540.1-P	Field mustard	cytosol	9.89	30.77
Bra007874.1-P	Field mustard	cytosol	12.9	30.0
Bra036572.1-P	Field mustard	extracellular	11.08	29.94
Bra037411.1-P	Field mustard	mitochondrion	8.17	26.57
Bra005554.1-P	Field mustard	cytosol	7.63	23.05
Bra022923.1-P	Field mustard	cytosol	7.31	22.22
Bra037358.1-P	Field mustard	cytosol	6.88	22.22

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EnsemblPlantsGene:Bra001787	EnsemblPlants:Bra001787.1	EnsemblPlants:Bra001787.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR002885	InterPro:IPR008974	UniProt:M4CC57
InterPro:MATH/TRAF_dom	PFAM:PF00917	PFAM:PF12854	PFscan:PS50144	PFscan:PS51375	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	InterPro:Pentatricopeptide_repeat	SMART:SM00061	SUPFAM:SSF49599	SignalP:SignalP-noTM	TIGRFAMs:TIGR00756
TMHMM:TMhelix	InterPro:TRAF-like	UniParc:UPI00025405C6	SEG:seg	:	:

Description

AT3G20370 (E=9e-160) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA03:+:18460365..18470555

Molecular Weight (calculated)

106706.0 Da

IEP (calculated)

7.788

GRAVY (calculated)

-0.416

Length

930 amino acids

Sequence
(BLAST)

001: MTSHYRKTIS IVSLLFCLFI TSASARSFIR QYTDDFNTNL QQENGAGPNP NLGEANYEDK YQEISSRDYK VSASNAVKGL RDRPPSSYTL KMESFNTLLK
101: SNYAERYESR PFAVGGYNWT LVVYPNGNKK DSGSGYLSLY VAIDNSTLVG AQQEVLADLR FYVFNNNERK YFTIQDTTVR RFNVFKTMWG FSQVLPVDTF
201: KDTKNGYLYD GDHCEFGVDV IIPSIAENSE LFSVTEKFFN PTSTWTIRGF STLLKDSYLS DVFSIGGRNW NIQVYPNGRG SGEGKFISMF LNLNEKEKLR
301: PYEKVYVRAK LRVLNQRKLN NVQRQLDSWY NRAVASWGFN QFISFDDLRD SSKGFLVNDV LMVQVEMEAV SSTKSLIVYP NGYRQDSGSG FISLYVAIDN
401: STLVEAHQEV FADLRFYVFK NNERKYFTIQ DTHAWRYNIF KTMWGFSQVL PLATFRDPSN GYLYDEDHCE FGVDVTIHSP FQSSELFSVA RNFDKPRFSW
501: TIRSFSALVG DTYFSDTFSV GGRNWNIQVN PSGRATREGR ALSMYLLLNA NEKNNKESFV ITPNIFTCNL LVKALCKKND VESAYKVLDE IPEMEENGAG
601: PNPNVGEVNY VDKLQEISSR DYKVSASNAV KGLRDRPPSS YTLKMESFNT LLKSNYAERY ESRPFAVGGY NWTLVVYPNG NKKDSGSGYL SLYVAIDNST
701: LVAAHQEVLA DLRFYIFNNN ERKYFTIQDT TVWRFNVFKT MWGFSQVLPV DTFKDPKNGY LYDGDHCEFG VDVIIPSIAE NSELFSATEK FYNPTFTWTI
801: RGFSTLLKDM YSSDVFTIGG RSWNIQVYPN GRGEGEGKFL SMFLKLNGEE KLRPYEKVYV RAKLRVLNQS KLNNVQNQLD SWFSRAVPSW GFRKLISFDD
901: LRDSSKGFLV NDMLMVQVEM EAVSSTKYFP

Best Arabidopsis Sequence Match ( AT3G20370.1 )
(BLAST)

001: MASHYRNTSA IAYLLLCLFI TSATAHSFIR QITDDLKTNL QQEVGAEPIQ NLDVGHYLQE NKEISSRDYK VSASNAVKGL RDRPPSSYSL KMESFNTLLK
101: STYTEKYVSR PFSVGGYNWT LVVFPNGNKK DSGSGYLSLY VAIDNSTLGQ QEIYADLRFY IFNKNERKYF TIQDTDVWKF SVFKTMWGFS QVLPIDTFKD
201: PTKGYLYDGD HCEFGVDVTM PSLYEKSELF SVTENFLNPR FTWTIRGFST LLKNSYLSEV FSIGGRSWNI QINPSGLGTG EGKALSMYLG LNVNEIFRPY
301: EKIYVRAKLR ALNQLNLSNI ERELDIWYNG PGYGEYSWGF PEFIYFPYLT DSSKGFVKND VLMVQVEMEA ISSTKYFPS

Arabidopsis Description

AT3g20370/MQC12_13 [Source:UniProtKB/TrEMBL;Acc:Q9LTQ5]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.