Factsheet for Bra020541.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05532	Canola	extracellular	100.0	100.0
Bra009894.1-P	Field mustard	cytosol	63.82	87.84
Bra036573.1-P	Field mustard	extracellular	86.04	86.29
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	85.75	86.0
Bra020540.1-P	Field mustard	cytosol	73.22	85.95
AT5G26320.1	Thale cress	vacuole	71.51	71.31
Bra036572.1-P	Field mustard	extracellular	67.24	68.6
Bra001785.1-P	Field mustard	nucleus	24.5	30.5
Bra040903.1-P	Field mustard	extracellular, vacuole	32.19	29.58
KRH68153	Soybean	cytosol	26.21	29.49
Bra001660.1-P	Field mustard	cytosol	23.65	28.92
Bra007873.1-P	Field mustard	cytosol	25.93	28.89
Bra040904.1-P	Field mustard	extracellular, vacuole	30.77	28.27
Bra000640.1-P	Field mustard	cytosol	25.07	27.5
Bra001786.1-P	Field mustard	extracellular, golgi	29.91	26.32
Bra003989.1-P	Field mustard	plastid	21.65	26.21
Bra031322.1-P	Field mustard	cytosol, plastid	23.08	26.13
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	26.5	26.05
Bra035787.1-P	Field mustard	vacuole	29.34	25.5
Bra005554.1-P	Field mustard	cytosol	22.22	25.32
Bra023852.1-P	Field mustard	cytosol	23.08	25.31
Bra037411.1-P	Field mustard	mitochondrion	20.51	25.17
Bra004405.1-P	Field mustard	plastid	26.21	25.14
Bra003990.1-P	Field mustard	plastid	21.37	25.0
Bra003837.1-P	Field mustard	cytosol	23.93	24.93
Bra022923.1-P	Field mustard	cytosol	21.37	24.51
Bra034175.1-P	Field mustard	cytosol, plastid	21.65	22.75
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	23.93	21.99
Bra037358.1-P	Field mustard	cytosol	17.95	21.88
Bra003836.1-P	Field mustard	extracellular, golgi	12.82	19.82
Bra007874.1-P	Field mustard	cytosol	22.51	19.75
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	11.68	19.07
Bra039646.1-P	Field mustard	plastid	21.37	16.93
Bra001787.1-P	Field mustard	endoplasmic reticulum	32.48	12.26

Protein Annotations

EnsemblPlants:Bra020541.1	EnsemblPlants:Bra020541.1-P	EnsemblPlantsGene:Bra020541	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF214	PFAM:PF00917	PFscan:PS50144	SignalP:SignalP-noTM	SMART:SM00061	SUPFAM:SSF49599
TMHMM:TMhelix	UniParc:UPI0002546C94	UniProt:M4DVJ7	MapMan:35.2	:	:

Description

AT5G26280 (E=2e-166) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA02:+:24687099..24688984

Molecular Weight (calculated)

39036.4 Da

IEP (calculated)

7.422

GRAVY (calculated)

-0.097

Length

351 amino acids

Sequence
(BLAST)

001: MDSQQRSLCF ISLAFLFITC SSAEFLIQQV TQGRGTENNS SYSLDANLGV TRVLRDERPS SKIVTIAGYS VIKGRGEPYE SSVFEAAGYK WRIVLYVVGN
101: ANDGGAGYIS LYVRIEETES LPFGWELNNV DLKLFVHNPK LNKYLTVTDG ALKRFNGVKK ESGFGQLIAL STFENTNEGY IVQDTCSFGA EILIVKPAEV
201: QEKVTFISNP PDNVFTWKIL RFSNLEDKFY YSADFLVGDR YWRLGFNPKG DGGGRPHALP IFLFAQGFGP NTVATNTWGA VNLRLKNQRS TNHRQIYSAA
301: WYPIRSGYGV GVNNIILLAD LNDASKGYLV NDAIIFEAEM VKVSVTNIVS V

Best Arabidopsis Sequence Match ( AT5G26280.1 )
(BLAST)

001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.