Factsheet for Bra007873.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44083	Canola	cytosol	100.0	100.0
Bra003989.1-P	Field mustard	plastid	59.68	64.83
Bra003990.1-P	Field mustard	plastid	57.46	60.33
Bra004405.1-P	Field mustard	plastid	69.21	59.56
Bra031322.1-P	Field mustard	cytosol, plastid	55.56	56.45
Bra023852.1-P	Field mustard	cytosol	53.97	53.12
Bra034175.1-P	Field mustard	cytosol, plastid	49.84	47.01
Bra007874.1-P	Field mustard	cytosol	59.05	46.5
Bra000640.1-P	Field mustard	cytosol	40.0	39.38
Bra001785.1-P	Field mustard	nucleus	35.24	39.36
Bra040904.1-P	Field mustard	extracellular, vacuole	43.49	35.86
Bra040903.1-P	Field mustard	extracellular, vacuole	43.17	35.6
Bra035787.1-P	Field mustard	vacuole	41.9	32.67
Bra003837.1-P	Field mustard	cytosol	34.6	32.34
Bra001786.1-P	Field mustard	extracellular, golgi	40.95	32.33
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	36.51	32.21
KRH68153	Soybean	cytosol	31.11	31.41
Bra009894.1-P	Field mustard	cytosol	25.08	30.98
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	37.14	30.63
Bra001660.1-P	Field mustard	cytosol	26.98	29.62
Bra020540.1-P	Field mustard	cytosol	27.62	29.1
Bra036573.1-P	Field mustard	extracellular	29.84	26.86
Bra036572.1-P	Field mustard	extracellular	29.21	26.74
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	29.52	26.57
Bra020541.1-P	Field mustard	extracellular	28.89	25.93
Bra037411.1-P	Field mustard	mitochondrion	23.17	25.52
Bra037358.1-P	Field mustard	cytosol	22.86	25.0
Bra039646.1-P	Field mustard	plastid	34.92	24.83
Bra003836.1-P	Field mustard	extracellular, golgi	17.46	24.23
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	15.56	22.79
Bra005554.1-P	Field mustard	cytosol	22.22	22.73
Bra022923.1-P	Field mustard	cytosol	21.9	22.55
Bra001787.1-P	Field mustard	endoplasmic reticulum	44.44	15.05

Protein Annotations

EnsemblPlants:Bra007873.1	EnsemblPlants:Bra007873.1-P	EnsemblPlantsGene:Bra007873	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002546870
UniProt:M4CUH8	MapMan:35.2	:	:	:	:

Description

AT3G22080 (E=3e-109) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA02:-:11450999..11452306

Molecular Weight (calculated)

36669.3 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.593

Length

315 amino acids

Sequence
(BLAST)

001: MSTGSGVVST IVKKWREHPP SSYCLKVDNF KQLEKFTTSS DDKYQSRLFS AGGYNWKLIV YPKGNKKDNG KGFISMYVEI DSKSLKSEQQ CEVFAELIFF
101: VYNKKENKYF TVQDVEVKRF NALKTVWGLR QVLPFDSFNN PVNGYVFEED QCEFGVDVVV PSPLTNWEIL SFNEKLQKPK FSWTVKKFSQ LKEHEYTSKK
201: FSVGERNWVL KLYPKGNSRE DDKWLSVFLH SADSDAPKAD EKIFVQAKLR VLDPHGSNHK AYQMDTWHIE KNMGWGWDEF LSLDELRKAY LDKEDALNVE
301: AEFEVVSATK YSPII

Best Arabidopsis Sequence Match ( AT3G22080.1 )
(BLAST)

001: MMCSSVSSTT LRSWRERTPN SYSLKLQNIS QVEKSTLFSD GKYQSRLFSS GGYNWRMIIY PKGNRKDDGS GFISMYVEID STSLLTTPTT EVFADLRFFV
101: FNKKENKYYT IQHVESKLFN AFRTIWGLAQ VLPVDTFTDP KNGYIFEGDQ CEFGVDVIVA APPTNWEIHT LHEALSQPKF FWTVKNFSEL NNNVYTSGNF
201: SMRERKWVLK LYPKGDVKGD RKWLSLYLYL DQSETLKESE KIFVQAQLRV LDPRGSNHVT HKISSWYTSS NTAWGYRKFV SLAEIPKAYL DKDTLKVQID
301: VEVVSEAEFS PSMI

Arabidopsis Description

Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:F4IYY5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.