Factsheet for Bra036573.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87054	Canola	extracellular	99.43	99.43
CDY19775	Canola	extracellular	98.57	98.57
Bra009894.1-P	Field mustard	cytosol	65.14	89.41
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	87.43	87.43
Bra020541.1-P	Field mustard	extracellular	86.29	86.04
Bra020540.1-P	Field mustard	cytosol	68.86	80.6
AT5G26320.1	Thale cress	vacuole	71.71	71.31
Bra036572.1-P	Field mustard	extracellular	68.29	69.48
Bra001785.1-P	Field mustard	nucleus	25.71	31.91
KRH68153	Soybean	cytosol	27.14	30.45
Bra001660.1-P	Field mustard	cytosol	24.86	30.31
Bra040903.1-P	Field mustard	extracellular, vacuole	32.57	29.84
Bra007873.1-P	Field mustard	cytosol	26.86	29.84
Bra040904.1-P	Field mustard	extracellular, vacuole	31.14	28.53
Bra000640.1-P	Field mustard	cytosol	25.71	28.12
Bra001786.1-P	Field mustard	extracellular, golgi	31.14	27.32
Bra003989.1-P	Field mustard	plastid	22.29	26.9
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	27.43	26.89
Bra035787.1-P	Field mustard	vacuole	30.57	26.49
Bra031322.1-P	Field mustard	cytosol, plastid	23.43	26.45
Bra037411.1-P	Field mustard	mitochondrion	21.43	26.22
Bra023852.1-P	Field mustard	cytosol	23.43	25.62
Bra003837.1-P	Field mustard	cytosol	24.57	25.52
Bra004405.1-P	Field mustard	plastid	26.57	25.41
Bra005554.1-P	Field mustard	cytosol	22.29	25.32
Bra003990.1-P	Field mustard	plastid	21.14	24.67
Bra022923.1-P	Field mustard	cytosol	20.86	23.86
Bra034175.1-P	Field mustard	cytosol, plastid	21.71	22.75
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	24.29	22.25
Bra037358.1-P	Field mustard	cytosol	18.29	22.22
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	12.57	20.47
Bra007874.1-P	Field mustard	cytosol	22.86	20.0
Bra003836.1-P	Field mustard	extracellular, golgi	12.86	19.82
Bra039646.1-P	Field mustard	plastid	22.29	17.61
Bra001787.1-P	Field mustard	endoplasmic reticulum	32.57	12.26

Protein Annotations

EnsemblPlants:Bra036573.1	EnsemblPlants:Bra036573.1-P	EnsemblPlantsGene:Bra036573	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF214	PFAM:PF00917	PFscan:PS50144	SignalP:SignalP-noTM	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0002541CFF	UniProt:M4F664	MapMan:35.1	:	:	:

Description

AT5G26280 (E=9e-167) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:+:1822626..1824489

Molecular Weight (calculated)

39477.8 Da

IEP (calculated)

8.529

GRAVY (calculated)

-0.253

Length

350 amino acids

Sequence
(BLAST)

001: MDSHKRSLGF ISLAFLFITC SSAEFLIQQV TEGKGTENNS SYNVEANLGE TRAFREERPS SKIVTIAGYS VIKGRFEPYE SSVFEAAGYR WRLVLYVIGN
101: KNDGGAGHIS LYVRMEETDS LPYGWEVNVD LKLFVHNPKT HKYLTVTDGT VKRYNAAKKE WGFGKLISLS TFENTNNGYI VQDTCSFGAE ILIVKPAEIQ
201: EKVTFISNPP NNVFTWKILR FSSLEDKFYY SADFLVGDRY WRLGFNPKGD GDGRPHALPL FLFAQGFKEN AVATNTWGAV NLRLKNQRNS NHRQLYSAAW
301: YPIRSDYGVG VNNIILLSDL KDPSKGYLVN DAIIFEAEMV KVSVTNIVSV

Best Arabidopsis Sequence Match ( AT5G26280.1 )
(BLAST)

001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.