Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 6
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G26260.1 | Thale cress | extracellular | 74.15 | 74.36 |
| CDY70520 | Canola | vacuole | 69.32 | 73.49 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 71.88 | 72.29 |
| Bra009895.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 71.88 | 72.29 |
| Bra009894.1-P | Field mustard | cytosol | 52.27 | 72.16 |
| CDX80557 | Canola | extracellular | 71.59 | 72.0 |
| CDY67361 | Canola | vacuole | 71.31 | 71.71 |
| Bra036573.1-P | Field mustard | extracellular | 71.31 | 71.71 |
| CDX87054 | Canola | extracellular | 71.31 | 71.71 |
| AT5G26280.3 | Thale cress | plastid | 75.0 | 71.54 |
| Bra020541.1-P | Field mustard | extracellular | 71.31 | 71.51 |
| CDY05532 | Canola | extracellular | 71.31 | 71.51 |
| CDX88229 | Canola | extracellular | 71.02 | 71.43 |
| CDY24977 | Canola | extracellular | 71.02 | 71.23 |
| CDX81956 | Canola | extracellular | 61.93 | 71.01 |
| AT5G26300.1 | Thale cress | extracellular | 70.17 | 70.77 |
| CDY19775 | Canola | extracellular | 70.17 | 70.57 |
| Bra020540.1-P | Field mustard | cytosol | 58.52 | 68.9 |
| CDY05531 | Canola | cytosol | 58.52 | 68.9 |
| CDY05324 | Canola | cytosol | 55.97 | 65.67 |
| AT5G26290.1 | Thale cress | extracellular | 61.08 | 63.99 |
| CDX87055 | Canola | golgi, plasma membrane | 58.52 | 61.86 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 59.66 | 60.69 |
| CDX87056 | Canola | extracellular | 59.09 | 60.64 |
| Bra036572.1-P | Field mustard | extracellular | 59.09 | 60.47 |
| CDY19777 | Canola | extracellular | 59.09 | 60.47 |
| AT2G04170.1 | Thale cress | mitochondrion | 59.38 | 49.76 |
| AT2G04190.1 | Thale cress | cytosol | 52.56 | 45.01 |
| AT4G09770.4 | Thale cress | cytosol | 33.81 | 36.84 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 35.51 | 29.27 |
| KRH68153 | Soybean | cytosol | 25.28 | 28.53 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 13.07 | 28.4 |
| AT3G22085.1 | Thale cress | cytosol | 23.3 | 28.18 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 28.12 | 27.27 |
| AT3G17380.1 | Thale cress | cytosol | 23.86 | 27.18 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 22.73 | 27.03 |
| AT3G22080.1 | Thale cress | mitochondrion | 23.86 | 26.75 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 28.41 | 26.67 |
| AT1G65370.1 | Thale cress | cytosol | 17.05 | 26.43 |
| AT3G46190.2 | Thale cress | cytosol | 23.01 | 26.05 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 27.84 | 25.86 |
| AT1G69650.1 | Thale cress | plastid | 21.31 | 25.51 |
| AT4G00780.1 | Thale cress | cytosol | 21.31 | 25.08 |
| AT4G01390.1 | Thale cress | cytosol | 21.31 | 25.0 |
| AT1G69660.1 | Thale cress | cytosol | 16.19 | 24.68 |
| AT3G28220.1 | Thale cress | cytosol | 25.57 | 24.32 |
| AT2G32880.1 | Thale cress | cytosol | 21.59 | 23.9 |
| AT2G15710.1 | Thale cress | cytosol | 23.01 | 22.19 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 21.88 | 19.44 |
| AT2G32870.1 | Thale cress | cytosol | 21.59 | 18.27 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:832701 | UniProt:A0A178ULU3 | ProteinID:AED93551.1 | ArrayExpress:AT5G26320 |
| EnsemblPlantsGene:AT5G26320 | RefSeq:AT5G26320 | TAIR:AT5G26320 | RefSeq:AT5G26320-TAIR-G | EnsemblPlants:AT5G26320.1 | TAIR:AT5G26320.1 |
| UniProt:F4JZS7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | RefSeq:NP_198004.1 | ProteinID:OAO93631.1 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 |
| PANTHER:PTHR26379:SF214 | SMART:SM00061 | SUPFAM:SSF49599 | SignalP:SignalP-noTM | InterPro:TRAF-like | UniParc:UPI00001625C3 |
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4JZS7]
Coordinates
chr5:+:9238227..9241333
Molecular Weight (calculated)
40001.4 Da
IEP (calculated)
7.075
GRAVY (calculated)
-0.257
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYQKWSLGF ISLVFLLITS SSAELLIKQV TEGRGIEYNN SYSLKTNLGL TRVLREERPS SKIVTITSFS VIKGRSEAFE SSTFEAAGYK WRFMLFVNGN
101: QNDPDGGHEN MALYVGIKET ESFPRGWEVN VDLKLFVHNE KLHKYLTVSD GTVKRYEAAK TYWGFGNLIP RTTLLDPNEG YILHDTLSFG AEISIVNPAE
201: KQEKITFISN PPDNVFTWKI LRFSTLENKF YYSDEFLVGD RYWRLGFNPK GYQGERPRAL SIFLYAQGYK ANAVITNTWG SVNLQLKNQR SSNHIQLYSE
301: AWCAIRSGYG IEGNSIILLE DLQNSSKGYL VNDAIIFEAE LVKVSVTNIV SA
101: QNDPDGGHEN MALYVGIKET ESFPRGWEVN VDLKLFVHNE KLHKYLTVSD GTVKRYEAAK TYWGFGNLIP RTTLLDPNEG YILHDTLSFG AEISIVNPAE
201: KQEKITFISN PPDNVFTWKI LRFSTLENKF YYSDEFLVGD RYWRLGFNPK GYQGERPRAL SIFLYAQGYK ANAVITNTWG SVNLQLKNQR SSNHIQLYSE
301: AWCAIRSGYG IEGNSIILLE DLQNSSKGYL VNDAIIFEAE LVKVSVTNIV SA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.