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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 3
  • cytosol 2
  • plasma membrane 1
  • nucleus 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G09780.1 Thale cress endoplasmic reticulum, golgi 82.35 62.3
AT5G26300.1 Thale cress extracellular 39.01 36.1
AT5G26260.1 Thale cress extracellular 39.01 35.9
AT5G26280.3 Thale cress plastid 40.25 35.23
AT5G26290.1 Thale cress extracellular 36.53 35.12
AT5G26320.1 Thale cress vacuole 36.84 33.81
AT3G22085.1 Thale cress cytosol 26.93 29.9
AT2G04190.1 Thale cress cytosol 37.15 29.2
AT1G65050.1 Thale cress cytosol, mitochondrion 14.24 28.4
AT2G04170.1 Thale cress mitochondrion 36.84 28.33
AT3G22080.1 Thale cress mitochondrion 26.93 27.71
KRH68153 Soybean cytosol 26.32 27.24
AT4G00780.1 Thale cress cytosol 24.77 26.76
AT1G69660.1 Thale cress cytosol 18.89 26.41
AT3G28220.1 Thale cress cytosol 30.03 26.22
AT3G17380.1 Thale cress cytosol 24.77 25.89
AT3G46190.2 Thale cress cytosol 24.46 25.4
AT4G01390.1 Thale cress cytosol 23.22 25.0
AT1G69650.1 Thale cress plastid 22.6 24.83
AT1G65150.2 Thale cress cytosol, mitochondrion, nucleus, plastid 22.6 24.66
AT2G32880.1 Thale cress cytosol 24.15 24.53
AT3G20370.1 Thale cress extracellular, plasma membrane 28.48 24.27
AT3G20360.1 Thale cress endoplasmic reticulum, extracellular 26.93 23.97
AT2G15710.1 Thale cress cytosol 26.93 23.84
AT3G20380.1 Thale cress extracellular, vacuole 27.24 23.47
AT1G58270.1 Thale cress golgi, plasma membrane, vacuole 28.48 23.23
AT1G65370.1 Thale cress cytosol 15.79 22.47
AT2G32870.1 Thale cress cytosol 25.08 19.47
Protein Annotations
Gene3D:2.60.210.10MapMan:35.2EntrezGene:826565UniProt:A0A1P8B3G1ProteinID:AEE82794.1ProteinID:AEE82795.1
ProteinID:ANM66116.1ArrayExpress:AT4G09770EnsemblPlantsGene:AT4G09770RefSeq:AT4G09770TAIR:AT4G09770RefSeq:AT4G09770-TAIR-G
EnsemblPlants:AT4G09770.4Unigene:At.33675GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR002083
InterPro:IPR008974InterPro:MATH/TRAF_domRefSeq:NP_001190695.1RefSeq:NP_001328032.1RefSeq:NP_192715.2PFAM:PF00917
PFscan:PS50144PANTHER:PTHR26379PANTHER:PTHR26379:SF213SMART:SM00061SUPFAM:SSF49599InterPro:TRAF-like
UniParc:UPI00084967A9:::::
Description
TRAF-like family protein [Source:TAIR;Acc:AT4G09770]
Coordinates
chr4:-:6154374..6155953
Molecular Weight (calculated)
37209.4 Da
IEP (calculated)
8.163
GRAVY (calculated)
-0.385
Length
323 amino acids
Sequence
(BLAST)
001: MQISFLASIQ INNSEVNNLY PKKFIIMETI REEAPSSYLM KLVGFSEVKF SHQPYESADF DVGGHKWRLI FYPAGKLEEG GKDHVSIYAR IENVGASMQI
101: DAELKFFIYN HNNKQYSVFQ DGTMKHYNKE KKECGFAQML LFSKFNDPKN GYIDGNACIV GVEIFVIKPI EKVERVVFTQ NPPENKFTWK ISHFSYIGDK
201: RYYYSDEFVV GDRKWRLKIS PKGDKKVRAL SVYVQAMAYL PNAVASSTYA KLRLRLLNQK NSNHIEKRVF HFYSRENGDG SGISELISVE DLNDESKGYL
301: VEDSIVLETT LLWVSDTKVV DSI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.