Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040904.1-P | Field mustard | extracellular, vacuole | 74.67 | 74.08 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 74.41 | 74.02 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 74.41 | 74.02 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 73.09 | 73.47 |
| Bra040903.1-P | Field mustard | extracellular, vacuole | 68.6 | 68.06 |
| CDY43081 | Canola | extracellular, vacuole | 68.6 | 68.06 |
| CDY50084 | Canola | extracellular, vacuole | 68.34 | 67.8 |
| Bra000640.1-P | Field mustard | cytosol | 54.88 | 65.0 |
| CDX83143 | Canola | cytosol | 54.88 | 65.0 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 74.14 | 63.86 |
| CDY29822 | Canola | vacuole | 66.75 | 62.78 |
| CDX82249 | Canola | plasma membrane, vacuole | 62.8 | 62.14 |
| Bra035787.1-P | Field mustard | vacuole | 65.96 | 61.88 |
| CDY25415 | Canola | vacuole | 65.96 | 61.88 |
| CDX82251 | Canola | extracellular, golgi | 63.85 | 60.65 |
| Bra001786.1-P | Field mustard | extracellular, golgi | 63.85 | 60.65 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 61.21 | 60.26 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 57.52 | 60.06 |
| Bra032150.1-P | Field mustard | endoplasmic reticulum, vacuole | 55.67 | 59.1 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 55.94 | 56.53 |
| CDY34004 | Canola | cytosol | 44.06 | 55.67 |
| CDY36040 | Canola | extracellular | 54.09 | 54.23 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 43.54 | 50.0 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 54.88 | 40.47 |
| AT3G22080.1 | Thale cress | mitochondrion | 32.45 | 39.17 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 16.36 | 38.27 |
| AT3G22085.1 | Thale cress | cytosol | 28.76 | 37.46 |
| AT3G28220.1 | Thale cress | cytosol | 35.88 | 36.76 |
| AT1G69650.1 | Thale cress | plastid | 28.5 | 36.73 |
| AT3G46190.2 | Thale cress | cytosol | 30.08 | 36.66 |
| AT2G15710.1 | Thale cress | cytosol | 34.3 | 35.62 |
| AT1G69660.1 | Thale cress | cytosol | 21.37 | 35.06 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 26.65 | 34.12 |
| AT1G65370.1 | Thale cress | cytosol | 20.05 | 33.48 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 34.3 | 32.83 |
| AT3G17380.1 | Thale cress | cytosol | 26.39 | 32.36 |
| Bra001787.1-P | Field mustard | endoplasmic reticulum | 74.67 | 30.43 |
| KRH68153 | Soybean | cytosol | 24.8 | 30.13 |
| AT5G26300.1 | Thale cress | extracellular | 26.65 | 28.94 |
| AT5G26260.1 | Thale cress | extracellular | 26.39 | 28.49 |
| AT4G09770.4 | Thale cress | cytosol | 24.27 | 28.48 |
| AT5G26280.3 | Thale cress | plastid | 27.44 | 28.18 |
| AT5G26320.1 | Thale cress | vacuole | 25.86 | 27.84 |
| AT5G26290.1 | Thale cress | extracellular | 24.27 | 27.38 |
| CDY36039 | Canola | vacuole | 63.32 | 26.06 |
| AT4G01390.1 | Thale cress | cytosol | 18.73 | 23.67 |
| AT4G00780.1 | Thale cress | cytosol | 18.21 | 23.08 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 24.54 | 21.78 |
| AT2G32880.1 | Thale cress | cytosol | 17.68 | 21.07 |
| AT2G04170.1 | Thale cress | mitochondrion | 23.22 | 20.95 |
| AT2G04190.1 | Thale cress | cytosol | 21.64 | 19.95 |
| AT2G32870.1 | Thale cress | cytosol | 17.94 | 16.35 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:821582 | UniProt:A0A178V9Q2 | ProteinID:AEE76370.1 | ArrayExpress:AT3G20370 |
| EnsemblPlantsGene:AT3G20370 | RefSeq:AT3G20370 | TAIR:AT3G20370 | RefSeq:AT3G20370-TAIR-G | EnsemblPlants:AT3G20370.1 | TAIR:AT3G20370.1 |
| EMBL:AY074866 | EMBL:AY088016 | EMBL:AY097389 | ProteinID:BAB02819.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0009506 | GO:GO:0016020 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | RefSeq:NP_566660.1 | ProteinID:OAP01642.1 | PFAM:PF00917 | PO:PO:0000037 | PO:PO:0007131 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0020030 | PO:PO:0020100 | PFscan:PS50144 |
| PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | UniProt:Q9LTQ5 | SMART:SM00061 | SUPFAM:SSF49599 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI000009C91B | : | : | : |
Description
AT3g20370/MQC12_13 [Source:UniProtKB/TrEMBL;Acc:Q9LTQ5]
Coordinates
chr3:+:7105371..7107389
Molecular Weight (calculated)
43451.4 Da
IEP (calculated)
6.537
GRAVY (calculated)
-0.323
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHYRNTSA IAYLLLCLFI TSATAHSFIR QITDDLKTNL QQEVGAEPIQ NLDVGHYLQE NKEISSRDYK VSASNAVKGL RDRPPSSYSL KMESFNTLLK
101: STYTEKYVSR PFSVGGYNWT LVVFPNGNKK DSGSGYLSLY VAIDNSTLGQ QEIYADLRFY IFNKNERKYF TIQDTDVWKF SVFKTMWGFS QVLPIDTFKD
201: PTKGYLYDGD HCEFGVDVTM PSLYEKSELF SVTENFLNPR FTWTIRGFST LLKNSYLSEV FSIGGRSWNI QINPSGLGTG EGKALSMYLG LNVNEIFRPY
301: EKIYVRAKLR ALNQLNLSNI ERELDIWYNG PGYGEYSWGF PEFIYFPYLT DSSKGFVKND VLMVQVEMEA ISSTKYFPS
101: STYTEKYVSR PFSVGGYNWT LVVFPNGNKK DSGSGYLSLY VAIDNSTLGQ QEIYADLRFY IFNKNERKYF TIQDTDVWKF SVFKTMWGFS QVLPIDTFKD
201: PTKGYLYDGD HCEFGVDVTM PSLYEKSELF SVTENFLNPR FTWTIRGFST LLKNSYLSEV FSIGGRSWNI QINPSGLGTG EGKALSMYLG LNVNEIFRPY
301: EKIYVRAKLR ALNQLNLSNI ERELDIWYNG PGYGEYSWGF PEFIYFPYLT DSSKGFVKND VLMVQVEMEA ISSTKYFPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.