Factsheet for AT5G26280.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 2
vacuole 2
cytosol 1
nucleus 1
endoplasmic reticulum 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, extracellular, mitochondrion, nucleus, plastid, vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G26300.1	Thale cress	extracellular	80.49	85.1
AT5G26260.1	Thale cress	extracellular	79.67	83.76
AT5G26320.1	Thale cress	vacuole	71.54	75.0
AT5G26290.1	Thale cress	extracellular	65.85	72.32
AT2G04170.1	Thale cress	mitochondrion	67.48	59.29
AT2G04190.1	Thale cress	cytosol	61.79	55.47
AT4G09770.4	Thale cress	cytosol	35.23	40.25
AT4G09780.1	Thale cress	endoplasmic reticulum, golgi	37.67	32.55
AT3G17380.1	Thale cress	cytosol	26.29	31.39
KRH68153	Soybean	cytosol	26.29	31.09
AT3G22085.1	Thale cress	cytosol	23.31	29.55
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	28.18	28.65
AT1G65050.1	Thale cress	cytosol, mitochondrion	12.47	28.4
AT3G22080.1	Thale cress	mitochondrion	24.12	28.34
AT3G20370.1	Thale cress	extracellular, plasma membrane	28.18	27.44
AT3G46190.2	Thale cress	cytosol	22.76	27.01
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	21.41	26.69
AT3G20380.1	Thale cress	extracellular, vacuole	27.1	26.67
AT4G00780.1	Thale cress	cytosol	20.87	25.75
AT3G28220.1	Thale cress	cytosol	25.47	25.41
AT1G65370.1	Thale cress	cytosol	15.45	25.11
AT1G69650.1	Thale cress	plastid	19.78	24.83
AT1G69660.1	Thale cress	cytosol	15.45	24.68
AT4G01390.1	Thale cress	cytosol	19.78	24.33
AT2G32880.1	Thale cress	cytosol	20.6	23.9
AT2G15710.1	Thale cress	cytosol	23.58	23.84
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	22.49	20.96
AT2G32870.1	Thale cress	cytosol	21.95	19.47

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.2	EntrezGene:832697	UniProt:A0A1P8BA53	ProteinID:AED93546.1	ProteinID:ANM68476.1
ArrayExpress:AT5G26280	EnsemblPlantsGene:AT5G26280	RefSeq:AT5G26280	TAIR:AT5G26280	RefSeq:AT5G26280-TAIR-G	EnsemblPlants:AT5G26280.3
EMBL:AY058050	Unigene:At.46463	EMBL:BT002686	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0009506	GO:GO:0016020	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom
RefSeq:NP_001330230.1	RefSeq:NP_568484.1	PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR26379	PANTHER:PTHR26379:SF214
SMART:SM00061	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	UniParc:UPI0008491E9C	:

Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]

Coordinates

chr5:+:9208573..9210654

Molecular Weight (calculated)

41634.4 Da

IEP (calculated)

9.019

GRAVY (calculated)

-0.281

Length

369 amino acids

Sequence
(BLAST)

001: MSLCLYKCTL FPNKTISQNM NNQKWSIGFI SLAFLFITSS SAEFIIQQVT KGRGIEYNSS YSLEENLGVT RELREERPSS KIVTITSFSV IKGRGEPYES
101: SVFEAAGYKW RLVLYVNGNK NDGGNDHISL YARIEETNSL PLGWEVNVDL KLFVHNGKLH KYLTVTDGLV KRYNNAKKEW GFGQLIPRST FYNANEGYLD
201: QDTGSFGAEI FIVKPAQQQE KVTFISNPPN NVFTWKILRF STLEDKFYYS DDFLVEDRYW RLGFNPKGDG GGRPHALPIF LFAQGHKANA VATNTWGAVN
301: LRLKNQRSTN HRQIYSAAWY PIGSGYGVGV NNIILLADLN DASKGYLVND AIIFEAEMVK VSITNIVSA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.