Factsheet for AT2G04170.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G26260.1	Thale cress	extracellular	57.62	68.95
AT5G26300.1	Thale cress	extracellular	56.9	68.48
AT5G26280.3	Thale cress	plastid	59.29	67.48
AT2G04190.1	Thale cress	cytosol	65.71	67.15
AT5G26290.1	Thale cress	extracellular	50.0	62.5
AT5G26320.1	Thale cress	vacuole	49.76	59.38
AT4G09770.4	Thale cress	cytosol	28.33	36.84
KRH68153	Soybean	cytosol	22.86	30.77
AT3G17380.1	Thale cress	cytosol	22.14	30.1
AT3G22085.1	Thale cress	cytosol	20.71	29.9
AT1G65050.1	Thale cress	cytosol, mitochondrion	10.95	28.4
AT4G09780.1	Thale cress	endoplasmic reticulum, golgi	28.1	27.63
AT1G69650.1	Thale cress	plastid	19.29	27.55
AT3G22080.1	Thale cress	mitochondrion	20.48	27.39
AT1G65370.1	Thale cress	cytosol	14.05	25.99
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	17.86	25.34
AT3G28220.1	Thale cress	cytosol	22.14	25.14
AT3G46190.2	Thale cress	cytosol	18.57	25.08
AT2G32880.1	Thale cress	cytosol	18.57	24.53
AT4G00780.1	Thale cress	cytosol	17.38	24.41
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	20.71	23.97
AT1G69660.1	Thale cress	cytosol	13.1	23.81
AT4G01390.1	Thale cress	cytosol	16.9	23.67
AT3G20370.1	Thale cress	extracellular, plasma membrane	20.95	23.22
AT2G15710.1	Thale cress	cytosol	20.0	23.01
AT3G20380.1	Thale cress	extracellular, vacuole	20.48	22.93
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	18.1	19.19
AT2G32870.1	Thale cress	cytosol	17.86	18.03

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.2	EntrezGene:814954	ProteinID:AEC05802.1	ProteinID:AEC05803.1	ProteinID:ANM61880.1
ArrayExpress:AT2G04170	EnsemblPlantsGene:AT2G04170	RefSeq:AT2G04170	TAIR:AT2G04170	RefSeq:AT2G04170-TAIR-G	EnsemblPlants:AT2G04170.1
TAIR:AT2G04170.1	EMBL:AY501356	EMBL:AY649317	Unigene:At.43555	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	RefSeq:NP_001031318.1	RefSeq:NP_001324072.1
RefSeq:NP_178502.2	PFAM:PF00917	PO:PO:0000293	PFscan:PS50144	PANTHER:PTHR26379	PANTHER:PTHR26379:SF214
UniProt:Q6RF45	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0000237AE0	SEG:seg

Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q6RF45]

Coordinates

chr2:-:1417182..1419248

Molecular Weight (calculated)

44407.1 Da

IEP (calculated)

9.846

GRAVY (calculated)

-0.542

Length

420 amino acids

Sequence
(BLAST)

001: MNRGGCGGGP GRGGRGFGGR GGGPGFGPGG PGFGPGGPGF GPGGPGFGPG GPGFGGRGPR GPGFGPRGPG PWSGPRGPRP GGGGGPGPGP WSGPRGPRPG
101: GGGGPGSGCG SGTGGGNQGQ GGMWRDERPS NKILTITSFS VIKGRGEPYE SSVFEAGGYK WRLVLYVNGN QNDGGNNHIS LYVRIEETES LPKGWEVNVE
201: LKLFVYNGKQ RKYLIVKDGI VKRYNDAKKE WGYGKLIPLT TFLDTNEGYL EQDIASFGAE IFSGTAVQVQ EKVTFISNPP NNVFTWKILH FSNLEDKFYY
301: SDDFLVEDRY WRLGFNPKGT GDGRSQAIPI FLYAQGHKPN AVATNTWGAV NLRLKNQRSS NHAQIYSAAW YPTRSDYGVG VNTIISLAEF NDASKGYSVN
401: DSIIFEAEMV KVSVTNIVPI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.