Factsheet for AT4G01390.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G00780.1	Thale cress	cytosol	78.0	78.26
CDY07146	Canola	cytosol	65.67	66.78
CDY51713	Canola	cytosol	65.33	66.44
Bra037411.1-P	Field mustard	mitochondrion	63.0	66.08
AT2G32880.1	Thale cress	cytosol	33.33	31.45
AT3G17380.1	Thale cress	cytosol	26.33	25.57
AT2G32870.1	Thale cress	cytosol	34.0	24.52
AT4G09770.4	Thale cress	cytosol	25.0	23.22
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	26.67	22.04
AT5G26290.1	Thale cress	extracellular	24.67	22.02
KRH68153	Soybean	cytosol	22.67	21.79
AT5G26320.1	Thale cress	vacuole	25.0	21.31
AT3G22085.1	Thale cress	cytosol	20.67	21.31
AT3G46190.2	Thale cress	cytosol	22.0	21.22
AT3G22080.1	Thale cress	mitochondrion	21.33	20.38
AT5G26300.1	Thale cress	extracellular	23.67	20.34
AT5G26260.1	Thale cress	extracellular	23.67	20.23
AT5G26280.3	Thale cress	plastid	24.33	19.78
AT3G20380.1	Thale cress	extracellular, vacuole	24.67	19.73
AT3G28220.1	Thale cress	cytosol	24.33	19.73
AT1G69650.1	Thale cress	plastid	19.33	19.73
AT1G69660.1	Thale cress	cytosol	14.67	19.05
AT3G20370.1	Thale cress	extracellular, plasma membrane	23.67	18.73
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	18.33	18.58
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	24.0	18.18
AT4G09780.1	Thale cress	endoplasmic reticulum, golgi	25.67	18.03
AT1G65050.1	Thale cress	cytosol, mitochondrion	9.67	17.9
AT2G04190.1	Thale cress	cytosol	24.0	17.52
AT1G65370.1	Thale cress	cytosol	13.0	17.18
AT2G04170.1	Thale cress	mitochondrion	23.67	16.9
AT2G15710.1	Thale cress	cytosol	18.67	15.34

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.2	EntrezGene:828075	ProteinID:AEE82018.1	ArrayExpress:AT4G01390	EnsemblPlantsGene:AT4G01390
RefSeq:AT4G01390	TAIR:AT4G01390	RefSeq:AT4G01390-TAIR-G	EnsemblPlants:AT4G01390.1	TAIR:AT4G01390.1	Unigene:At.54080
UniProt:F4JI18	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	InterPro:IPR002083	InterPro:IPR008974
InterPro:MATH/TRAF_dom	RefSeq:NP_192048.2	PFAM:PF00917	PO:PO:0000293	PO:PO:0007115	PO:PO:0007123
PO:PO:0009005	PO:PO:0009025	PO:PO:0009047	PO:PO:0020030	PO:PO:0020100	PFscan:PS50144
PANTHER:PTHR26379	PANTHER:PTHR26379:SF213	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000173935B

Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4JI18]

Coordinates

chr4:-:570200..571595

Molecular Weight (calculated)

34274.1 Da

IEP (calculated)

8.151

GRAVY (calculated)

-0.363

Length

300 amino acids

Sequence
(BLAST)

001: MSRPISLEEM VRLFKVRHAT AHMFKIDHFS LLRKHGIEKV ESSVFDLAGH KWKLSVHPNG HTNAKGTHYV SLYLMNQAPV YDTLTYELLA VSQLEPKWHT
101: HGRDEYETNE ELGSEGFREF ISLVDLKKNG FLIGDCCMFG VKFHGIEPAK PGTAESFSLI EKPLNHRVTW MMTMFSSFNP GNVHQSNEFV VGTRKWRIKV
201: HPRGSMGEKD KSFSVYLSAL GFVNNAPKTK TYARFKLRVL DQVSRNHVEK TISGWLGAEP DDRHGFADFM PLGELDDPYL VKDKLYVGVD FDVISVSNYC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.