Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 5
- mitochondrion 1
- vacuole 4
- plasma membrane 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 58.13 | 57.82 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 56.53 | 55.94 |
| Bra040904.1-P | Field mustard | extracellular, vacuole | 56.8 | 55.76 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 56.53 | 55.64 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 56.53 | 55.64 |
| Bra040903.1-P | Field mustard | extracellular, vacuole | 52.8 | 51.83 |
| CDY43081 | Canola | extracellular, vacuole | 52.27 | 51.31 |
| CDY50084 | Canola | extracellular, vacuole | 52.0 | 51.05 |
| CDY29822 | Canola | vacuole | 54.67 | 50.87 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 59.2 | 50.45 |
| Bra032150.1-P | Field mustard | endoplasmic reticulum, vacuole | 47.73 | 50.14 |
| Bra035787.1-P | Field mustard | vacuole | 53.6 | 49.75 |
| CDY25415 | Canola | vacuole | 53.6 | 49.75 |
| Bra000640.1-P | Field mustard | cytosol | 42.4 | 49.69 |
| CDX83143 | Canola | cytosol | 42.4 | 49.69 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 47.73 | 49.31 |
| Bra001786.1-P | Field mustard | extracellular, golgi | 51.47 | 48.37 |
| CDX82251 | Canola | extracellular, golgi | 51.47 | 48.37 |
| CDX82249 | Canola | plasma membrane, vacuole | 49.33 | 48.3 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 47.2 | 45.97 |
| CDY36040 | Canola | extracellular | 45.07 | 44.71 |
| CDY34004 | Canola | cytosol | 35.2 | 44.0 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 37.07 | 42.12 |
| AT1G69660.1 | Thale cress | cytosol | 22.4 | 36.36 |
| AT3G46190.2 | Thale cress | cytosol | 29.33 | 35.37 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 47.73 | 34.82 |
| AT3G22080.1 | Thale cress | mitochondrion | 28.8 | 34.39 |
| AT1G69650.1 | Thale cress | plastid | 26.13 | 33.33 |
| AT1G65370.1 | Thale cress | cytosol | 20.0 | 33.04 |
| AT3G22085.1 | Thale cress | cytosol | 25.6 | 32.99 |
| AT3G28220.1 | Thale cress | cytosol | 32.27 | 32.7 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 13.33 | 30.86 |
| AT2G15710.1 | Thale cress | cytosol | 29.6 | 30.41 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 31.73 | 30.05 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 23.2 | 29.39 |
| KRH68153 | Soybean | cytosol | 24.27 | 29.17 |
| AT5G26320.1 | Thale cress | vacuole | 26.67 | 28.41 |
| AT5G26290.1 | Thale cress | extracellular | 25.07 | 27.98 |
| AT3G17380.1 | Thale cress | cytosol | 22.93 | 27.83 |
| AT5G26300.1 | Thale cress | extracellular | 25.6 | 27.51 |
| AT4G09770.4 | Thale cress | cytosol | 23.47 | 27.24 |
| AT5G26280.3 | Thale cress | plastid | 26.67 | 27.1 |
| AT5G26260.1 | Thale cress | extracellular | 25.33 | 27.07 |
| AT4G01390.1 | Thale cress | cytosol | 19.73 | 24.67 |
| Bra001787.1-P | Field mustard | endoplasmic reticulum | 59.47 | 23.98 |
| AT4G00780.1 | Thale cress | cytosol | 18.67 | 23.41 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 24.27 | 21.31 |
| AT2G32880.1 | Thale cress | cytosol | 17.6 | 20.75 |
| AT2G04170.1 | Thale cress | mitochondrion | 22.93 | 20.48 |
| CDY36039 | Canola | vacuole | 49.33 | 20.09 |
| AT2G04190.1 | Thale cress | cytosol | 21.6 | 19.71 |
| AT2G32870.1 | Thale cress | cytosol | 16.53 | 14.9 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:821583 | ProteinID:AEE76371.1 | EMBL:AK176197 | EMBL:AK176301 |
| EMBL:AK176307 | ArrayExpress:AT3G20380 | EnsemblPlantsGene:AT3G20380 | RefSeq:AT3G20380 | TAIR:AT3G20380 | RefSeq:AT3G20380-TAIR-G |
| EnsemblPlants:AT3G20380.1 | TAIR:AT3G20380.1 | Unigene:At.38247 | ProteinID:BAB02820.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_188673.1 | PFAM:PF00917 |
| PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | UniProt:Q9LTQ4 | SMART:SM00061 | SUPFAM:SSF49599 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI000009F9E0 | : | : |
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTQ4]
Coordinates
chr3:+:7108097..7109970
Molecular Weight (calculated)
43160.1 Da
IEP (calculated)
8.921
GRAVY (calculated)
-0.290
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSLYRNTSS FVYLLFCLFI TSSSAGSFIR QFSDDFNTIQ QQKGKDGPTP NLEKGNYLHK HNEISSSLDY KVSASNIVKG LTEVPPSSYS FKIESYNSFL
101: KIPYLGFESR PFAAGGYNWV LKVHPNGLTW DGTSGYVSLY VLLHESTPIT ADQVVYADLR FYIFNNNEKK YFTVQDTNVW KFTAPKRLLG FPKVMSADQF
201: EDLRNGYIYD NHCEFGVDVT VASHYQKSES LFVTEKFDNP IFTYALLRFS TLLKESYQSD VFSIGGRSMY LQVFPNGRNL SKGKAMSLYL NINDKFKPFE
301: MIYVRAKLRV LNQRKLNNVE IQVSNWYTSW FYYSGDFQII PLADLRDSSK GFVVNDMLKV EVQLEGISST KWYPS
101: KIPYLGFESR PFAAGGYNWV LKVHPNGLTW DGTSGYVSLY VLLHESTPIT ADQVVYADLR FYIFNNNEKK YFTVQDTNVW KFTAPKRLLG FPKVMSADQF
201: EDLRNGYIYD NHCEFGVDVT VASHYQKSES LFVTEKFDNP IFTYALLRFS TLLKESYQSD VFSIGGRSMY LQVFPNGRNL SKGKAMSLYL NINDKFKPFE
301: MIYVRAKLRV LNQRKLNNVE IQVSNWYTSW FYYSGDFQII PLADLRDSSK GFVVNDMLKV EVQLEGISST KWYPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.